Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq11482 118 4e-24 seq5180 114 5e-23 seq9262 102 3e-19 seq17213 91.5 6e-16 seq9343 84.2 9e-14 >seq11482 Length=289922 Score = 118 bits (130), Expect = 4e-24 Identities = 109/136 (80%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACT--ATGCCTGAATAGGGTGAA 607 |||||||| ||| || |||||||||||||||||||| ||| || ||| |||| Sbjct 5711 AGTAAGAGTATATGCAATGAGACCCGAAAGATGGTGAACTTAATG--TGTGTAGAATGAA 5768 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 ||||| |||||| |||||||| | ||| |||||||||| |||||||||||||||||||| Sbjct 5769 GCCAGGGGAAACCCTGGTGGAAGTTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAAC 5828 Query 668 TTGGGTATAGGGGCGA 683 || | |||||||| Sbjct 5829 ATGCATTAAGGGGCGA 5844 Score = 109 bits (120), Expect = 2e-21 Identities = 112/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAA 97 ||||| | || ||||| || ||| | | || ||||| ||||| || ||| |||||||| Sbjct 4953 CGAGTAGCGTAGTTTGAGATTGCTACGCCAACGTGGGACGTAAACTTGTTCCAAAGCTAA 5012 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 |||| ||||||||||||| ||||||| |||| ||||| ||||||||||| || Sbjct 5013 ATATCATAACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGCACTCTGA 5072 Query 158 AAAGAGAGTTAAAAAGCACGTGAAA 182 | ||||||||||| || |||| ||| Sbjct 5073 AGAGAGAGTTAAATAGTACGTAAAA 5097 >seq5180 Length=100460 Score = 114 bits (126), Expect = 5e-23 Identities = 96/116 (83%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 |||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||| Sbjct 60894 GACCCGAAAGATAGTGAACTATGCCTGGCGAGGGTGAAGCCCCAGGAAACTGGGGTGGAG 60835 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGAT--CGTCAAATTTGGGTATAGGGGCGA 683 || || ||| ||| || |||||||||| || |||| | ||||| |||||||||| Sbjct 60834 GCCCGTAGCCGTTGTGACGTGCAAATCCATGGCGTC--AGTTGGGCATAGGGGCGA 60781 >seq9262 Length=60696 Score = 102 bits (112), Expect = 3e-19 Identities = 91/112 (81%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 574 CGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC 633 |||||||| |||||||||||||| ||||||||||| |||||||| |||| |||| | Sbjct 10562 CGAAAGATAGTGAACTATGCCTGGCGAGGGTGAAGCCCCAGGAAACTGGGGTGTAGGCCC 10503 Query 634 GCAGCGGTTCTGGCGTGCAAATCGAT--CGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||| || |||||||||| || |||| | ||||| |||||||||| Sbjct 10502 GTAGCCGTTGTGACGTGCAAATCCATGGCGTC--AGTTGGGCATAGGGGCGA 10453 >seq17213 Length=151290 Score = 91.5 bits (100), Expect = 6e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||||||||| || || ||||||||||| ||||||||||| |||||||| ||||||| Sbjct 48041 GACCCGAAACATAGTAAACTATGCCTGGCGAGGGTGAAGCCCCAGGAAACTGGGGTGGAG 47982 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 || || ||| ||| || |||||||||| || Sbjct 47981 GCCCGTAGCCGTTGTGACGTGCAAATCCAT 47952 >seq9343 Length=57822 Score = 84.2 bits (92), Expect = 9e-14 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 574 CGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC 633 |||||||| |||||||||||||| ||||||||||| |||||||| |||| |||| | Sbjct 12381 CGAAAGATAGTGAACTATGCCTGGCGAGGGTGAAGCCCCAGGAAACTGGGGTGTAGGCCC 12322 Query 634 GCAGCGGTTCTGGCGTGCAAATCGAT--CGTCA 664 | ||| ||| || ||||||||| || ||||| Sbjct 12321 GTAGCCGTTGTGATGTGCAAATCCATGGCGTCA 12289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079613900000