Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq10921 178 1e-42 seq11737 152 5e-35 seq1447 152 5e-35 seq13487 127 2e-27 seq1 100 3e-19 >seq10921 Length=25804 Score = 178 bits (196), Expect = 1e-42 Identities = 147/177 (83%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 |||| ||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| Sbjct 2307 ACGGGGGATGCCTAGGGTCTCAGAGGCGAAGAAGGACGTGATAAGCTGCGATAAGCTACG 2366 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGA 125 |||| ||||| | ||| |||||||||| ||||||||||||||||| || ||| | Sbjct 2367 GGGAGGAGCACACATCCATTAATCCGTAGATTTCCGAATGGGGCAACCCAATTAGTTGAA 2426 Query 126 GA-TATATCATAACGCTAGGCGT-TAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || || | | | || || | | |||||||||||||||||||||||||||||||| Sbjct 2427 GACTAATTATTCATGCAAGACATGAAGGCGAACGTGGGGAACTGAAACATCTAAGTA 2483 >seq11737 Length=277544 Score = 152 bits (168), Expect = 5e-35 Identities = 139/173 (80%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || |||||||||||||||| ||||||| ||| |||||| |||||||||||||||| |||| Sbjct 219369 GGCGGATGCCTAGGCTCTCAGAGGCGACGAAAGACGTGGTAAGCTGCGAAAAGCTGCGGG 219310 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 |||||||||| ||||| ||||||| |||| || ||||||||||||||| ||| ||| Sbjct 219309 GATTGGCACACACGAAGTGATCCGCAGATGTCTGAATGGGGCAACCCGGCTGGTTGAAGA 219250 Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 ||| || | | | | ||| ||| ||||||||||||||||||||| Sbjct 219249 CCAGTCA-CACCTTCG--GGTGGGCAAACCCAGGGAACTGAAACATCTAAGTA 219200 >seq1447 Length=1029730 Score = 152 bits (168), Expect = 5e-35 Identities = 139/173 (80%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || |||||||||||||||| ||||||| ||| |||||| |||||||||||||||| |||| Sbjct 757004 GGCGGATGCCTAGGCTCTCAGAGGCGACGAAAGACGTGGTAAGCTGCGAAAAGCTGCGGG 757063 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 |||||||||| ||||| ||||||| |||| || ||||||||||||||| ||| ||| Sbjct 757064 GATTGGCACACACGAAGTGATCCGCAGATGTCTGAATGGGGCAACCCGGCTGGTTGAAGA 757123 Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 ||| || | | | | ||| ||| ||||||||||||||||||||| Sbjct 757124 CCAGTCA-CACCTTCG--GGTGGGCAAACCCAGGGAACTGAAACATCTAAGTA 757173 >seq13487 Length=4875 Score = 127 bits (140), Expect = 2e-27 Identities = 143/189 (76%), Gaps = 12/189 (6%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | ||||||||||| ||| || |||||| |||||||||| || ||||||||||| Sbjct 923 GCACATGGTGGATGCCTTGGCAGTCATAGGCGATGAAGGACGTGGTAGCCTGCGAAAAGC 982 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 |||||||| ||||| | | | ||||||||||||| ||||||||||| ||||| | Sbjct 983 TACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGATGTCCGAATGGGGAAACCCACCCTT 1042 Query 121 TTGGAGATATATCATA------AC---GCTAGGCGTTAGGCGAACGTGGGGAACTGAAAC 171 || | | ||| || | || ||| ||| |||||||| ||| |||||||||| Sbjct 1043 TTAGGGGTATCGCACAGTGAATACATAGCTGTGCG--AGGCGAACCTGGAGAACTGAAAC 1100 Query 172 ATCTAAGTA 180 ||||||||| Sbjct 1101 ATCTAAGTA 1109 >seq1 Length=2207822 Score = 100 bits (110), Expect = 3e-19 Identities = 135/182 (74%), Gaps = 12/182 (7%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||||||||||||| |||||| ||||| |||| Sbjct 516853 GGTGGATGCCTTGGCGATTACAGGCGACGAAGGACGTGATAGCCTGCGATAAGCTTCGGG 516912 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAG 126 || ||||| || | |||||||| |||| ||||||||||| ||||| || | | Sbjct 516913 GAGCTGGCAAATTAGCTTTGATCCGGAGATTTCCGAATGGGGAAACCC--ACCCTTAGGG 516970 Query 127 ATAT----ATCATAACGC-TAGGCGTT---AGGCGAACGTGGGGAACTGAAACATCTAAG 178 ||| ||| || | |||| ||| |||||||| || |||||||||||||| || Sbjct 516971 GTATCGCAATCTGAATACATAGG-GTTGCGAGGCGAACCGGGTGAACTGAAACATCTCAG 517029 Query 179 TA 180 || Sbjct 517030 TA 517031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476716858000