Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq1 585 7e-165 seq11737 268 2e-69 seq1447 268 2e-69 seq10921 241 3e-61 >seq1 Length=2207822 Score = 585 bits (648), Expect = 7e-165 Identities = 374/407 (92%), Gaps = 0/407 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 515074 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 515133 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 515134 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTATGTAAGACAGAGGT 515193 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||||||||||| |||||||||| ||| |||||||||||| || ||||| | |||| Sbjct 515194 GAAATCCCCGGGCTCAACCTGGGAACTGCCTTTGTGACTGCATAGCTTGAGTGCGGCAGA 515253 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 515254 GGGGGATGGAATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCGATGG 515313 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 515314 CGAAGGCAATCCCCTGGGCCTGCACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 515373 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 ||||||||||||||||||||||||||||||||||| |||||| ||||||||| | | | Sbjct 515374 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCAACTGGTTGTTGGGAAGGTTCC 515433 Query 363 TCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || ||||||||||||||||||||||||||||||||||||| ||| Sbjct 515434 TTCTCAGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTAC 515480 Score = 585 bits (648), Expect = 7e-165 Identities = 374/407 (92%), Gaps = 0/407 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 520659 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 520718 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 520719 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTATGTAAGACAGAGGT 520778 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||||||||||| |||||||||| ||| |||||||||||| || ||||| | |||| Sbjct 520779 GAAATCCCCGGGCTCAACCTGGGAACTGCCTTTGTGACTGCATAGCTTGAGTGCGGCAGA 520838 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 520839 GGGGGATGGAATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCGATGG 520898 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 520899 CGAAGGCAATCCCCTGGGCCTGCACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 520958 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 ||||||||||||||||||||||||||||||||||| |||||| ||||||||| | | | Sbjct 520959 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCAACTGGTTGTTGGGAAGGTTCC 521018 Query 363 TCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || ||||||||||||||||||||||||||||||||||||| ||| Sbjct 521019 TTCTCAGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTAC 521065 >seq11737 Length=277544 Score = 268 bits (296), Expect = 2e-69 Identities = 300/399 (75%), Gaps = 4/399 (1%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 220917 GAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTA 220858 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||| ||| |||| ||||| || || ||| || |||||| ||| |||||| || Sbjct 220857 TCCGGATTTATTGGGTTTAAAGGGTCCGTAGGTGGGCTTGTAAGTCAGTGGTGAAAGCCT 220798 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 ||||||| ||| ||| ||| ||||| | || ||||| || || | | | Sbjct 220797 ATCGCTTAACGATAGAACTGCCATTGATACTGCTAGCCTTGAGTGAGTTTGAAGTAGCTA 220738 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 |||| ||||||| ||||||||| ||||||| ||| ||| || ||||||||| Sbjct 220737 GAATATGTAGTGTAGCGGTGAAATGCATAGATATTACATAGAATACCGATTGCGAAGGCA 220678 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 | || || |||||| || ||| ||||||||||||||||| ||||||||||||| Sbjct 220677 GGTTACTAAGACTCAACTGACACTGATGGACGAAAGCGTGGGGAGCGAACAGGATTAGAT 220618 Query 311 ACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTGGT 370 |||||||||||||||||| |||||||| | ||| | |||| || ||||| ||| ||| Sbjct 220617 ACCCTGGTAGTCCACGCCGTAAACGATGTATACTCGCTGTT-GGAATTTATTTCAGTGG- 220560 Query 371 AACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | ||| || | | |||| ||| |||||||| ||| Sbjct 220559 --CTAAGCGAAAGTGATAAGTATACCACCTGGGGAGTAC 220523 >seq1447 Length=1029730 Score = 268 bits (296), Expect = 2e-69 Identities = 300/399 (75%), Gaps = 4/399 (1%) Strand=Plus/Plus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 755456 GAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTA 755515 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||| ||| |||| ||||| || || ||| || |||||| ||| |||||| || Sbjct 755516 TCCGGATTTATTGGGTTTAAAGGGTCCGTAGGTGGGCTTGTAAGTCAGTGGTGAAAGCCT 755575 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 ||||||| ||| ||| ||| ||||| | || ||||| || || | | | Sbjct 755576 ATCGCTTAACGATAGAACTGCCATTGATACTGCTAGCCTTGAGTGAGTTTGAAGTAGCTA 755635 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 |||| ||||||| ||||||||| ||||||| ||| ||| || ||||||||| Sbjct 755636 GAATATGTAGTGTAGCGGTGAAATGCATAGATATTACATAGAATACCGATTGCGAAGGCA 755695 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 | || || |||||| || ||| ||||||||||||||||| ||||||||||||| Sbjct 755696 GGTTACTAAGACTCAACTGACACTGATGGACGAAAGCGTGGGGAGCGAACAGGATTAGAT 755755 Query 311 ACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTGGT 370 |||||||||||||||||| |||||||| | ||| | |||| || ||||| ||| ||| Sbjct 755756 ACCCTGGTAGTCCACGCCGTAAACGATGTATACTCGCTGTT-GGAATTTATTTCAGTGG- 755813 Query 371 AACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | ||| || | | |||| ||| |||||||| ||| Sbjct 755814 --CTAAGCGAAAGTGATAAGTATACCACCTGGGGAGTAC 755850 >seq10921 Length=25804 Score = 241 bits (266), Expect = 3e-61 Identities = 264/350 (75%), Gaps = 1/350 (0%) Strand=Plus/Plus Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69 ||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 809 AGAATAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCGAGCGTT 868 Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129 | |||| ||| |||| ||||| ||||| |||||| | |||| | | || ||| Sbjct 869 ATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCTTAATAAGTCGGTGGTTAAAAGT 928 Query 130 CCGGGCTTAACC-TGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGG 188 ||||||| | | ||| | | |||| || ||| | |||| | Sbjct 929 AGCAGCTTAACTGTTTTACATGCCATCGATACTGTTGAGCTTGAGATATTTGGAGGCAGC 988 Query 189 TGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGG 248 | ||||| | ||||||| ||||||||| |||||| | ||||| ||| || ||||||| Sbjct 989 TAGAATTTCCGGTGTAGCGGTGAAATGCATAGATACCGGAAGGAATACCGATTGCGAAGG 1048 Query 249 CAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAG 308 ||| || || | ||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 1049 CAGGTTGCTACGAATAAACTGACGCTGATGCACGAAAGCGTGGGGATCAAACAGGATTAG 1108 Query 309 ATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATT 358 |||||||||||||||||||| |||||||| |||||||||||||| || Sbjct 1109 ATACCCTGGTAGTCCACGCCGTAAACGATGATTACTAGTTGTTGGGGTTT 1158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289367872000