Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20]
18,000 sequences; 550,885,727 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq1 163 4e-38
seq14174 161 1e-37
seq13487 138 2e-30
seq11737 134 2e-29
seq10921 134 2e-29
seq1447 134 2e-29
>seq1
Length=2207822
Score = 163 bits (180), Expect = 4e-38
Identities = 186/247 (75%), Gaps = 6/247 (2%)
Strand=Plus/Minus
Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66
|||||| |||||||||||||||| || ||||| ||||||| | ||||| ||| | ||
Sbjct 518662 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCGACTTTC-GTCTTTGCAGAGTGCT 518604
Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126
||||||||| ||||||||||| || | |||||||||| || | |||| || ||
Sbjct 518603 GTGTTTTTAATAAACAGTCGCAGCCACCGATTCTCTGCGGCCTCATTGGGCTCCCCAAGT 518544
Query 127 C----GTTCACCAGC-AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181
||||||| | | ||||| |||||| |||||||||||| | || |||||||| |
Sbjct 518543 AAATGGTTCACCTACTAAAGGCACACCTTCTTCCGAAGTTACGGTGTCAATTTGCCGAGT 518484
Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241
||||| ||| ||||| | | | |||||||| || ||| | | |||| |||||||||
Sbjct 518483 TCCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCGCACCAGTGTCGGTT 518424
Query 242 TACGGTA 248
| |||||
Sbjct 518423 TGCGGTA 518417
>seq14174
Length=3265
Score = 161 bits (178), Expect = 1e-37
Identities = 181/243 (74%), Gaps = 23/243 (9%)
Strand=Plus/Minus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||| ||||||||||||| || |||||||| ||| | | ||| ||
Sbjct 1750 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTGC-GACTTAGCGG 1692
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
||||||||||||| |||||||||||| | ||| ||| ||||||||| ||||
Sbjct 1691 AGACCTGTGTTTTTGGTAAACAGTCGCCTGGATCTCTTCACTGCGACCA------GCTC- 1639
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
|| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1638 ---------TCGC------TGGCACCCCTTCTTCCGAAGTTACGGGGCCATTTTGCCGAG 1594
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
||||||| | |||| | || | ||||||| ||||| ||| ||||||||||||||
Sbjct 1593 TTCCTTAGAGAGAGTTATCTCGCGCCCCTTAGTTTTCTCAACCATCCCACCTGTGTCGGT 1534
Query 241 TTA 243
|||
Sbjct 1533 TTA 1531
>seq13487
Length=4875
Score = 138 bits (152), Expect = 2e-30
Identities = 181/246 (74%), Gaps = 5/246 (2%)
Strand=Plus/Minus
Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66
|||||| |||||||||||||||| ||| ||||| || |||| | || || ||| || ||
Sbjct 2789 CTTCCAGCACCGGGCAGGCGTCACTCCCTATACGTCCACTTTC-GTGTTTGCAGAGAGCT 2731
Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT-CAACACG 125
||||||||| ||||||||||| || | || ||| ||| | | || | ||
Sbjct 2730 GTGTTTTTATTAAACAGTCGCAGCCACCATTTTATTGCAACCCCTTCGTCCTTCCACTGT 2671
Query 126 TCGT--TCAC-CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT 182
|| | ||| | || ||| ||||||||||||||||||| ||| |||||||| ||
Sbjct 2670 TCATGGTCAAACTACAAGGGCGTACCTTCTCCCGAAGTTACGGTACCAATTTGCCGAGTT 2611
Query 183 CCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
|||| || ||||| | | | |||||||| || ||| || | ||||||||||||||||
Sbjct 2610 CCTTCTCCTGAGTTCTCTCAAGCGCCTTAGAATACTCATCCCGCCCACCTGTGTCGGTTT 2551
Query 243 ACGGTA 248
|||||
Sbjct 2550 GCGGTA 2545
>seq11737
Length=277544
Score = 134 bits (148), Expect = 2e-29
Identities = 178/249 (71%), Gaps = 25/249 (10%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGAC-TTACCGTCTTCGCA 59
|||| ||||||| ||||||||||| ||||| || ||||| ||||| ||| ||||||||
Sbjct 217649 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCATATACGTCGACATTAA--TCTTCGCA 217706
Query 60 CGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC 119
| | ||||||||| ||||||||||| | | ||||||||| ||||
Sbjct 217707 TAGCCATGTGTTTTTGTTAAACAGTCGCCTGGGCCATTTCTCTGCGGCCACA-------- 217758
Query 120 AACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179
|| || ||||| ||| || |||||||||||| ||| | |||||| |
Sbjct 217759 ---------TT-----GCTGTGGCTCCCTTTATCCCGAAGTTACAGGGTTAATTTGCCTA 217804
Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239
||||||| ||| ||||| ||| | |||||| ||||| | ||| |||||||||||
Sbjct 217805 GTTCCTTAGCCATGATTCACTCGAGCACCTTAGGCTTCTCGCCTCGACTACCTGTGTCGG 217864
Query 240 TTTACGGTA 248
|||||||||
Sbjct 217865 TTTACGGTA 217873
>seq10921
Length=25804
Score = 134 bits (148), Expect = 2e-29
Identities = 178/249 (71%), Gaps = 25/249 (10%)
Strand=Plus/Minus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGAC-TTACCGTCTTCGCA 59
|||| ||||||| ||||||||||| ||||| || ||||| ||||| ||| ||||||||
Sbjct 4079 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCATATACGTCGACATTAA--TCTTCGCA 4022
Query 60 CGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC 119
| | ||||||||| ||||||||||| | | ||||||||| ||||
Sbjct 4021 TAGCCATGTGTTTTTGTTAAACAGTCGCCTGGGCCATTTCTCTGCGGCCACA-------- 3970
Query 120 AACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179
|| || ||||| ||| || |||||||||||| ||| | |||||| |
Sbjct 3969 ---------TT-----GCTGTGGCTCCCTTTATCCCGAAGTTACAGGGTTAATTTGCCTA 3924
Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239
||||||| ||| ||||| ||| | |||||| ||||| | ||| |||||||||||
Sbjct 3923 GTTCCTTAGCCATGATTCACTCGAGCACCTTAGGCTTCTCGCCTCGACTACCTGTGTCGG 3864
Query 240 TTTACGGTA 248
|||||||||
Sbjct 3863 TTTACGGTA 3855
>seq1447
Length=1029730
Score = 134 bits (148), Expect = 2e-29
Identities = 178/249 (71%), Gaps = 25/249 (10%)
Strand=Plus/Minus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGAC-TTACCGTCTTCGCA 59
|||| ||||||| ||||||||||| ||||| || ||||| ||||| ||| ||||||||
Sbjct 758724 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCATATACGTCGACATTAA--TCTTCGCA 758667
Query 60 CGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC 119
| | ||||||||| ||||||||||| | | ||||||||| ||||
Sbjct 758666 TAGCCATGTGTTTTTGTTAAACAGTCGCCTGGGCCATTTCTCTGCGGCCACA-------- 758615
Query 120 AACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179
|| || ||||| ||| || |||||||||||| ||| | |||||| |
Sbjct 758614 ---------TT-----GCTGTGGCTCCCTTTATCCCGAAGTTACAGGGTTAATTTGCCTA 758569
Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239
||||||| ||| ||||| ||| | |||||| ||||| | ||| |||||||||||
Sbjct 758568 GTTCCTTAGCCATGATTCACTCGAGCACCTTAGGCTTCTCGCCTCGACTACCTGTGTCGG 758509
Query 240 TTTACGGTA 248
|||||||||
Sbjct 758508 TTTACGGTA 758500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694278914000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |