Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1 163 4e-38 seq14174 161 1e-37 seq13487 138 2e-30 seq11737 134 2e-29 seq10921 134 2e-29 seq1447 134 2e-29 >seq1 Length=2207822 Score = 163 bits (180), Expect = 4e-38 Identities = 186/247 (75%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| ||||||| | ||||| ||| | || Sbjct 518662 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCGACTTTC-GTCTTTGCAGAGTGCT 518604 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||||| ||||||||||| || | |||||||||| || | |||| || || Sbjct 518603 GTGTTTTTAATAAACAGTCGCAGCCACCGATTCTCTGCGGCCTCATTGGGCTCCCCAAGT 518544 Query 127 C----GTTCACCAGC-AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 ||||||| | | ||||| |||||| |||||||||||| | || |||||||| | Sbjct 518543 AAATGGTTCACCTACTAAAGGCACACCTTCTTCCGAAGTTACGGTGTCAATTTGCCGAGT 518484 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| ||| ||||| | | | |||||||| || ||| | | |||| ||||||||| Sbjct 518483 TCCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCGCACCAGTGTCGGTT 518424 Query 242 TACGGTA 248 | ||||| Sbjct 518423 TGCGGTA 518417 >seq14174 Length=3265 Score = 161 bits (178), Expect = 1e-37 Identities = 181/243 (74%), Gaps = 23/243 (9%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||||| ||| | | ||| || Sbjct 1750 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTGC-GACTTAGCGG 1692 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| | ||| ||| ||||||||| |||| Sbjct 1691 AGACCTGTGTTTTTGGTAAACAGTCGCCTGGATCTCTTCACTGCGACCA------GCTC- 1639 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || | ||||||||||||| |||||||||||||||||||||||||| Sbjct 1638 ---------TCGC------TGGCACCCCTTCTTCCGAAGTTACGGGGCCATTTTGCCGAG 1594 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||||||| ||||| ||| |||||||||||||| Sbjct 1593 TTCCTTAGAGAGAGTTATCTCGCGCCCCTTAGTTTTCTCAACCATCCCACCTGTGTCGGT 1534 Query 241 TTA 243 ||| Sbjct 1533 TTA 1531 >seq13487 Length=4875 Score = 138 bits (152), Expect = 2e-30 Identities = 181/246 (74%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| ||| ||||| || |||| | || || ||| || || Sbjct 2789 CTTCCAGCACCGGGCAGGCGTCACTCCCTATACGTCCACTTTC-GTGTTTGCAGAGAGCT 2731 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT-CAACACG 125 ||||||||| ||||||||||| || | || ||| ||| | | || | || Sbjct 2730 GTGTTTTTATTAAACAGTCGCAGCCACCATTTTATTGCAACCCCTTCGTCCTTCCACTGT 2671 Query 126 TCGT--TCAC-CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT 182 || | ||| | || ||| ||||||||||||||||||| ||| |||||||| || Sbjct 2670 TCATGGTCAAACTACAAGGGCGTACCTTCTCCCGAAGTTACGGTACCAATTTGCCGAGTT 2611 Query 183 CCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 |||| || ||||| | | | |||||||| || ||| || | |||||||||||||||| Sbjct 2610 CCTTCTCCTGAGTTCTCTCAAGCGCCTTAGAATACTCATCCCGCCCACCTGTGTCGGTTT 2551 Query 243 ACGGTA 248 ||||| Sbjct 2550 GCGGTA 2545 >seq11737 Length=277544 Score = 134 bits (148), Expect = 2e-29 Identities = 178/249 (71%), Gaps = 25/249 (10%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGAC-TTACCGTCTTCGCA 59 |||| ||||||| ||||||||||| ||||| || ||||| ||||| ||| |||||||| Sbjct 217649 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCATATACGTCGACATTAA--TCTTCGCA 217706 Query 60 CGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC 119 | | ||||||||| ||||||||||| | | ||||||||| |||| Sbjct 217707 TAGCCATGTGTTTTTGTTAAACAGTCGCCTGGGCCATTTCTCTGCGGCCACA-------- 217758 Query 120 AACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 || || ||||| ||| || |||||||||||| ||| | |||||| | Sbjct 217759 ---------TT-----GCTGTGGCTCCCTTTATCCCGAAGTTACAGGGTTAATTTGCCTA 217804 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 ||||||| ||| ||||| ||| | |||||| ||||| | ||| ||||||||||| Sbjct 217805 GTTCCTTAGCCATGATTCACTCGAGCACCTTAGGCTTCTCGCCTCGACTACCTGTGTCGG 217864 Query 240 TTTACGGTA 248 ||||||||| Sbjct 217865 TTTACGGTA 217873 >seq10921 Length=25804 Score = 134 bits (148), Expect = 2e-29 Identities = 178/249 (71%), Gaps = 25/249 (10%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGAC-TTACCGTCTTCGCA 59 |||| ||||||| ||||||||||| ||||| || ||||| ||||| ||| |||||||| Sbjct 4079 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCATATACGTCGACATTAA--TCTTCGCA 4022 Query 60 CGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC 119 | | ||||||||| ||||||||||| | | ||||||||| |||| Sbjct 4021 TAGCCATGTGTTTTTGTTAAACAGTCGCCTGGGCCATTTCTCTGCGGCCACA-------- 3970 Query 120 AACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 || || ||||| ||| || |||||||||||| ||| | |||||| | Sbjct 3969 ---------TT-----GCTGTGGCTCCCTTTATCCCGAAGTTACAGGGTTAATTTGCCTA 3924 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 ||||||| ||| ||||| ||| | |||||| ||||| | ||| ||||||||||| Sbjct 3923 GTTCCTTAGCCATGATTCACTCGAGCACCTTAGGCTTCTCGCCTCGACTACCTGTGTCGG 3864 Query 240 TTTACGGTA 248 ||||||||| Sbjct 3863 TTTACGGTA 3855 >seq1447 Length=1029730 Score = 134 bits (148), Expect = 2e-29 Identities = 178/249 (71%), Gaps = 25/249 (10%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGAC-TTACCGTCTTCGCA 59 |||| ||||||| ||||||||||| ||||| || ||||| ||||| ||| |||||||| Sbjct 758724 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCATATACGTCGACATTAA--TCTTCGCA 758667 Query 60 CGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC 119 | | ||||||||| ||||||||||| | | ||||||||| |||| Sbjct 758666 TAGCCATGTGTTTTTGTTAAACAGTCGCCTGGGCCATTTCTCTGCGGCCACA-------- 758615 Query 120 AACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 || || ||||| ||| || |||||||||||| ||| | |||||| | Sbjct 758614 ---------TT-----GCTGTGGCTCCCTTTATCCCGAAGTTACAGGGTTAATTTGCCTA 758569 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 ||||||| ||| ||||| ||| | |||||| ||||| | ||| ||||||||||| Sbjct 758568 GTTCCTTAGCCATGATTCACTCGAGCACCTTAGGCTTCTCGCCTCGACTACCTGTGTCGG 758509 Query 240 TTTACGGTA 248 ||||||||| Sbjct 758508 TTTACGGTA 758500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694278914000