Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq11737 158 1e-36 seq10921 158 1e-36 seq1447 158 1e-36 seq14174 95.1 1e-17 seq13487 84.2 2e-14 seq1 75.2 1e-11 >seq11737 Length=277544 Score = 158 bits (174), Expect = 1e-36 Identities = 141/175 (81%), Gaps = 5/175 (3%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| ||||||| | || | |||||| ||| |||||||||| || || Sbjct 217870 CGTAAACCGACACAGGTAGTCGAGGCGAGAAGCCTAAGGTGCTCGAGTGAATCATGGCTA 217811 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 |||||||||||||| | |||||||||||||||||||||||| | | ||| ||| | Sbjct 217810 AGGAACTAGGCAAATTAACCCTGTAACTTCGGGATAAAGGGAGC---CACAGCAAT--GT 217756 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||||||| || |||||| ||||||||||||||||||| |||| ||| || Sbjct 217755 GGCCGCAGAGAAATGGCCCAGGCGACTGTTTAACAAAAACACATGGCTATGCGAA 217701 >seq10921 Length=25804 Score = 158 bits (174), Expect = 1e-36 Identities = 141/175 (81%), Gaps = 5/175 (3%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| ||||||| | || | |||||| ||| |||||||||| || || Sbjct 3858 CGTAAACCGACACAGGTAGTCGAGGCGAGAAGCCTAAGGTGCTCGAGTGAATCATGGCTA 3917 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 |||||||||||||| | |||||||||||||||||||||||| | | ||| ||| | Sbjct 3918 AGGAACTAGGCAAATTAACCCTGTAACTTCGGGATAAAGGGAGC---CACAGCAAT--GT 3972 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||||||| || |||||| ||||||||||||||||||| |||| ||| || Sbjct 3973 GGCCGCAGAGAAATGGCCCAGGCGACTGTTTAACAAAAACACATGGCTATGCGAA 4027 >seq1447 Length=1029730 Score = 158 bits (174), Expect = 1e-36 Identities = 141/175 (81%), Gaps = 5/175 (3%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| ||||||| | || | |||||| ||| |||||||||| || || Sbjct 758503 CGTAAACCGACACAGGTAGTCGAGGCGAGAAGCCTAAGGTGCTCGAGTGAATCATGGCTA 758562 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 |||||||||||||| | |||||||||||||||||||||||| | | ||| ||| | Sbjct 758563 AGGAACTAGGCAAATTAACCCTGTAACTTCGGGATAAAGGGAGC---CACAGCAAT--GT 758617 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||||||| || |||||| ||||||||||||||||||| |||| ||| || Sbjct 758618 GGCCGCAGAGAAATGGCCCAGGCGACTGTTTAACAAAAACACATGGCTATGCGAA 758672 >seq14174 Length=3265 Score = 95.1 bits (104), Expect = 1e-17 Identities = 123/166 (74%), Gaps = 7/166 (4%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| || | |||||| | ||||||| || ||| || | | | |||| Sbjct 1532 AAACCGACACAGGTGGGATGGTTGAGAAAACTAAGGGGCGCGAGATAA-CTCTCTCTAAG 1590 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| || ||| |||||||||| | || |||| || | | ||| ||| Sbjct 1591 GAACTCGGCAAAATGGCCCCGTAACTTCGGAAGAAGGGGTGCC-AGCGAGAGCTGGT--- 1646 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| ||| || ||||||| |||||||| |||||||||||| || Sbjct 1647 -CGCAGTGAAGAGATCCAGGCGACTGTTTACCAAAAACACAGGTCT 1691 >seq13487 Length=4875 Score = 84.2 bits (92), Expect = 2e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTT 80 ||||||| |||||| || | |||| ||| ||| |||||||||||||| ||| ||| || Sbjct 2548 CGCAAACCGACACAGGTGGGCGGGATGAGTATTCTAAGGCGCTTGAGAGAACTCA-GGAG 2606 Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||| |||||| || | |||||||||||| || Sbjct 2607 AAGGAACTCGGCAAATTGGTACCGTAACTTCGGGAGAA 2644 >seq1 Length=2207822 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| ||||| || || | ||| ||| |||||||||||||| ||| || | Sbjct 518420 CGCAAACCGACACTGGTGCGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCTGGAGA 518479 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCT 127 ||||||| |||||| |||| | |||||||||| | || | || ||| Sbjct 518480 AGGAACTCGGCAAATTGACACCGTAACTTCGGAAGAAGGTGTGCCT 518525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531107372000