Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1 439 6e-121 seq13487 403 5e-110 seq11737 266 8e-69 seq1447 266 8e-69 seq14174 262 1e-67 seq10921 253 5e-65 >seq1 Length=2207822 Score = 439 bits (486), Expect = 6e-121 Identities = 348/416 (84%), Gaps = 10/416 (2%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| | | |||||| ||||| ||||||| ||| ||||||||| || |||||||| Sbjct 518852 CGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGACAGT 518793 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 518792 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 518733 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||| |||||||||||||||| || Sbjct 518732 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTTCGATCAAGAGCTT-GC---- 518678 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 |||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| Sbjct 518677 ----ACCCCATCAATTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCGACTT 518622 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||| ||||||||||||||||||||||||||||||||||||| || | ||| || || Sbjct 518621 TCGTCTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCCACCGATTCTCTGCGGCC 518562 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTC-ACCGGCGCACCTTCTCCCGAAGTTAC 359 || ||| | || || | |||||| | | ||| |||||||| |||||||||| Sbjct 518561 TCATTGGGCTCCCCAAGTAAATGGTTCACCTACTAAAGGCACACCTTCTTCCGAAGTTAC 518502 Query 360 GGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 |||| | |||||| ||||||||| || ||||||||||||||||||| | || ||| Sbjct 518501 GGTGTCAATTTGCCGAGTTCCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACTC 518446 >seq13487 Length=4875 Score = 403 bits (446), Expect = 5e-110 Identities = 351/430 (82%), Gaps = 17/430 (4%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| | | |||||| ||||| | ||||| ||| ||||||||| || |||||||| Sbjct 2979 CGCGGGGAGATTGCATCATCACAAACACTTCAACTTCGCTGAGTCTCAGGAGGAGACAGT 2920 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2919 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 2860 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||| |||| ||||||||||| || Sbjct 2859 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGCTT-GC---- 2805 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||| Sbjct 2804 ----ACCCCATCATTTAATCTTCCAGCACCGGGCAGGCGTCACTCCCTATACGTCCACTT 2749 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCC-TGGTATCTTCGAC 299 |||||||||||||| |||||||||||| |||||||||||||| || | ||| | | || Sbjct 2748 TCGTGTTTGCAGAGAGCTGTGTTTTTATTAAACAGTCGCAGCCACCATTTTAT-TGCAAC 2690 Query 300 CGGCATGAGCTT--ACGGAGCAAGTCCTTCACCCT-CACCGGCGCACCTTCTCCCGAAGT 356 | | ||| || | || | ||| || || |||| ||||||||||||||| Sbjct 2689 CCCTTCGTCCTTCCACTGTTCATG---GTCAAACTACAAGGGCGTACCTTCTCCCGAAGT 2633 Query 357 TACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCT 416 |||||| || |||||| ||||||||| || ||||||||||||||||||| | || ||| Sbjct 2632 TACGGTACCAATTTGCCGAGTTCCTTCTCCTGAGTTCTCTCAAGCGCCTTAGAATACTCA 2573 Query 417 ACCCAACCAC 426 ||| |||| Sbjct 2572 TCCCGCCCAC 2563 >seq11737 Length=277544 Score = 266 bits (294), Expect = 8e-69 Identities = 228/279 (82%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAGC 60 |||| || | |||||||||| | | | ||||||||| ||| ||| ||| ||||||| Sbjct 217457 GCGGGTAACCGGCATCTTCACCGATACTACAATTTCACCGAG-CTCATGGTTGAGACAGT 217515 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 217516 GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 217575 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| |||||||| |||| |||||| | | Sbjct 217576 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAGTCAAAAGCTTCTCCGAA 217635 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 | |||| | || |||||||||| |||||||||||| |||| || |||||||| || | Sbjct 217636 GATAACTTCCTCCCTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCATATACGTCGACAT 217695 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 | | || ||| || ||||||||| ||||||||||| Sbjct 217696 TAATCTTCGCATAGCCATGTGTTTTTGTTAAACAGTCGC 217734 >seq1447 Length=1029730 Score = 266 bits (294), Expect = 8e-69 Identities = 228/279 (82%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAGC 60 |||| || | |||||||||| | | | ||||||||| ||| ||| ||| ||||||| Sbjct 758916 GCGGGTAACCGGCATCTTCACCGATACTACAATTTCACCGAG-CTCATGGTTGAGACAGT 758858 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 758857 GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 758798 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| |||||||| |||| |||||| | | Sbjct 758797 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAGTCAAAAGCTTCTCCGAA 758738 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 | |||| | || |||||||||| |||||||||||| |||| || |||||||| || | Sbjct 758737 GATAACTTCCTCCCTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCATATACGTCGACAT 758678 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 | | || ||| || ||||||||| ||||||||||| Sbjct 758677 TAATCTTCGCATAGCCATGTGTTTTTGTTAAACAGTCGC 758639 >seq14174 Length=3265 Score = 262 bits (290), Expect = 1e-67 Identities = 300/406 (74%), Gaps = 28/406 (7%) Strand=Plus/Minus Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74 |||||||||| | | | ||||| | ||| ||| |||||||| | |||||||| Sbjct 1929 ATCTTCACAGACAATCCTATTTCGCCGAGCCTCTCTCCGAGACAGCATCCAGATCGTTAC 1870 Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATT 134 ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1869 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 1810 Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAA 194 ||||||||||||||| |||||||||||| || |||||||| | ||| ||| | Sbjct 1809 GTTACGGCCGCCGTTCACCGGGGCTTCGGTCGTCAGCTTCGCTTGCGCTGACCAACTTCC 1750 Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 ||||||||||||||| |||||||||||| ||| |||| || ||| || || || ||| Sbjct 1749 TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTGCGACTTAGCGGAG 1690 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGG-TATCTTCGACCGGCATGAGCTTAC 313 |||||||||| ||||||||| |||||| | ||||| || | | |||| Sbjct 1689 ACCTGTGTTTTTGGTAAACAGTC------GCCTGGATCTCTTC-ACTGCGACCAGCT--- 1640 Query 314 GGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCC 373 ||| | ||| | |||||| |||||||||||| ||| ||||||| Sbjct 1639 -----------------CTCGCTGGCACCCCTTCTTCCGAAGTTACGGGGCCATTTTGCC 1597 Query 374 TAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||||||| ||||| |||| || |||| || ||||| ||| Sbjct 1596 GAGTTCCTTAGAGAGAGTTATCTCGCGCCCCTTAGTTTTCTCAACC 1551 >seq10921 Length=25804 Score = 253 bits (280), Expect = 5e-65 Identities = 225/279 (81%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAG-TCTCGGGTGGAGACAGC 60 |||| || || |||||||||| | | | ||||||| | ||| || ||| || |||||| Sbjct 4271 GCGGGTAGACGGCATCTTCACCGTCACTACAATTTCGCCGAGCTCACGGCTG-AGACAGT 4213 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4212 GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 4153 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||||||||| | | ||||| | | Sbjct 4152 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGGTTCAATGCTTCTCTTGC 4093 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 | | || | || |||||||||| |||||||||||| |||| || |||||||| || | Sbjct 4092 GATGACTTCCTCTCTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCATATACGTCGACAT 4033 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 | | || ||| || ||||||||| ||||||||||| Sbjct 4032 TAATCTTCGCATAGCCATGTGTTTTTGTTAAACAGTCGC 3994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260573056000