Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1 468 2e-129 seq11737 464 2e-128 seq1447 464 2e-128 seq10921 342 2e-91 >seq1 Length=2207822 Score = 468 bits (518), Expect = 2e-129 Identities = 405/499 (81%), Gaps = 11/499 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 515478 TACGGCCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGATGAT 515537 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||||||||| ||||||||| | |||||||| || ||| Sbjct 515538 GTGGTTTAATTCGATGCAACGCGAAAAACCTTACCTACCCTTGACATGGCAGGAATCCTG 515597 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTG---ACAGGTGATGCATGGTTGTCGT 177 |||||||| || | | ||| || | || ||||||| ||||||| ||||| Sbjct 515598 TAGAGATATGGGAGTGC---TCGAAAGAGAACCTGCACACAGGTGCTGCATGGCCGTCGT 515654 Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGT 237 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 515655 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCATTAGT 515714 Query 238 TGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 ||| | | || ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 515715 TGCTACGA--AA---GGGCACTCTAATGAGACTGCCGGTGACAAACCGGAGGAAGGTGGG 515769 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || ||||||| || ||||| |||||||| | ||||||||||||| |||||||| | Sbjct 515770 GATGACGTCAGGTCCTCATGGCCCTTATGGGTAGGGCTACACACGTCATACAATGGCCGG 515829 Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417 |||| ||||| || || |||||||| ||| ||||||| ||| | || ||| |||| Sbjct 515830 TACAGAGGGCTGCCAACCCGCGAGGGGGAGCCAATCCCAGAAAACCGGTCGTAGTCCGGA 515889 Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGC 477 | | |||||||||||||||| ||||| ||||||||||||||||| |||||| ||| Sbjct 515890 TCGCAGTCTGCAACTCGACTGCGTGAAGTCGGAATCGCTAGTAATCGCGGATCAGAATGT 515949 Query 478 TACGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 515950 CGCGGTGAATACGTTCCCG 515968 Score = 145 bits (160), Expect = 2e-32 Identities = 88/93 (95%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 521063 TACGGCCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGATGAT 521122 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTA 93 |||||||||||||| |||||||||| ||||||| Sbjct 521123 GTGGTTTAATTCGATGCAACGCGAAAAACCTTA 521155 >seq11737 Length=277544 Score = 464 bits (514), Expect = 2e-128 Identities = 409/501 (82%), Gaps = 13/501 (3%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 220525 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGATCAT 220466 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTC-TGACCCCT 119 |||||||||||||| | |||||| |||||||||||| ||| | | | |||| Sbjct 220465 GTGGTTTAATTCGATGATACGCGAGGAACCTTACCAAGGCTTAAATGCATAATGACAGGG 220406 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 ||||| |||| |||| ||||| ||||| || ||||| ||||||| |||||||| Sbjct 220405 CTAGAAATAGCTTTTTC---TTCGG---ACAGAATGCAAGGTGCTGCATGGCTGTCGTCA 220352 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 ||||||| |||||| |||| |||||||||| |||||||||||||||| || ||||||| Sbjct 220351 GCTCGTGCCGTGAGGTGTTAGGTTAAGTCCTGCAACGAGCGCAACCCCTATCATTAGTTG 220292 Query 240 CCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTGG 296 ||| | ||||| ||| ||||||| ||||||| ||| ||||| | ||||||||||| Sbjct 220291 CCAACGGGTTAAGCCGGGGACTCTAATGAGACTGCCAGTG-CAAACTGAGAGGAAGGTGG 220233 Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 |||||||||||| |||||| | |||||| | |||||||||||||||| |||||||| Sbjct 220232 GGACGACGTCAAGTCATCACGGCCCTTACGCCTTGGGCTACACACGTGATACAATGGCAG 220173 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 |||| |||||||| | |||||||||| | || ||| | |||| ||||||||||| Sbjct 220172 GTACAGAGGGCAGCTACACCGCGAGGTGATGCGAAT-CTTCAAAGCCTGTCTCAGTTCGG 220114 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CAT 475 |||| |||||||||||||||| |||||||||||||||||||||||||| | ||||| ||| Sbjct 220113 ATTGGAGTCTGCAACTCGACTCTATGAAGCTGGAATCGCTAGTAATCGCATATCAGCCAT 220054 Query 476 GCTACGGTGAATACGTTCCCG 496 | | ||||||||||||||||| Sbjct 220053 GATGCGGTGAATACGTTCCCG 220033 >seq1447 Length=1029730 Score = 464 bits (514), Expect = 2e-128 Identities = 409/501 (82%), Gaps = 13/501 (3%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 755848 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGATCAT 755907 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTC-TGACCCCT 119 |||||||||||||| | |||||| |||||||||||| ||| | | | |||| Sbjct 755908 GTGGTTTAATTCGATGATACGCGAGGAACCTTACCAAGGCTTAAATGCATAATGACAGGG 755967 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 ||||| |||| |||| ||||| ||||| || ||||| ||||||| |||||||| Sbjct 755968 CTAGAAATAGCTTTTTC---TTCGG---ACAGAATGCAAGGTGCTGCATGGCTGTCGTCA 756021 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 ||||||| |||||| |||| |||||||||| |||||||||||||||| || ||||||| Sbjct 756022 GCTCGTGCCGTGAGGTGTTAGGTTAAGTCCTGCAACGAGCGCAACCCCTATCATTAGTTG 756081 Query 240 CCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTGG 296 ||| | ||||| ||| ||||||| ||||||| ||| ||||| | ||||||||||| Sbjct 756082 CCAACGGGTTAAGCCGGGGACTCTAATGAGACTGCCAGTG-CAAACTGAGAGGAAGGTGG 756140 Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 |||||||||||| |||||| | |||||| | |||||||||||||||| |||||||| Sbjct 756141 GGACGACGTCAAGTCATCACGGCCCTTACGCCTTGGGCTACACACGTGATACAATGGCAG 756200 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 |||| |||||||| | |||||||||| | || ||| | |||| ||||||||||| Sbjct 756201 GTACAGAGGGCAGCTACACCGCGAGGTGATGCGAAT-CTTCAAAGCCTGTCTCAGTTCGG 756259 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CAT 475 |||| |||||||||||||||| |||||||||||||||||||||||||| | ||||| ||| Sbjct 756260 ATTGGAGTCTGCAACTCGACTCTATGAAGCTGGAATCGCTAGTAATCGCATATCAGCCAT 756319 Query 476 GCTACGGTGAATACGTTCCCG 496 | | ||||||||||||||||| Sbjct 756320 GATGCGGTGAATACGTTCCCG 756340 >seq10921 Length=25804 Score = 342 bits (378), Expect = 2e-91 Identities = 387/505 (77%), Gaps = 19/505 (4%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| | |||| | |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1205 TACGCCGGCAACGGTGAAACTCAAAGGAATTGACGGGGGTCCGCACAAGCGGTGGAGCAT 1264 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| | |||||| |||||||||| | || || | ||| | Sbjct 1265 GTGGTTTAATTCGATGATACGCGAGGAACCTTACCTAGGCTAGAA----TGTGAGCGA-- 1318 Query 121 TAGAGAT-AGAGGTTTCCCCTTCGGGG--GACAGAGTGACA-GGTGATGCATGGTTGTCG 176 || | | |||| | | || | ||| | | ||| |||| ||||||| |||| Sbjct 1319 -AGTGTTCAGAGATGGATACGTCAGCAATGAC-GCGAAACAAGGTGCTGCATGGCCGTCG 1376 Query 177 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAG 236 |||| ||||| |||||| ||||||||||||||||||||||| |||||||| || | | Sbjct 1377 TCAGTTCGTGCCGTGAGGTGTTGGGTTAAGTCCCGCAACGAACGCAACCCCTATAATCTG 1436 Query 237 TTGCCATCATT--AAGTTGGGCACTCTAAGTT-GACTGCCGGTGACAAACCG-GAGGAAG 292 |||||| ||| | | |||| |||| | ||| ||||||| | ||| | ||||||| Sbjct 1437 TTGCCAGCATGTCATGATGGGGACTC-AGGTTAGACTGCCTACG-CAAGTAGAGAGGAAG 1494 Query 293 GTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATG 352 | ||||||||||||| |||||||| |||||| | | |||| ||||||||||||||||| Sbjct 1495 GAGGGGACGACGTCAGGTCATCATGGCCCTTACGCCTAGGGCGACACACGTGCTACAATG 1554 Query 353 GACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGT 412 | |||| || ||||||| | || |||| |||| || |||| || |||| Sbjct 1555 GTAGGTACAGAGTGCAGCGAGCTTGTAAGAGTAAGCGAATCACAAAAAGCCTATCACAGT 1614 Query 413 TCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG 472 |||||||| |||||||||||||| |||||||||||||||||||||||||| | ||||| Sbjct 1615 TCGGATTGGGGTCTGCAACTCGACCCTATGAAGCTGGAATCGCTAGTAATCGCATATCAG 1674 Query 473 -CATGCTACGGTGAATACGTTCCCG 496 |||| | ||||||||||||||||| Sbjct 1675 CCATGATGCGGTGAATACGTTCCCG 1699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503729280000