Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq11482 325 6e-87 seq5180 158 2e-36 seq2991 158 2e-36 seq3891 147 3e-33 seq5535 145 1e-32 seq13336 114 2e-23 >seq11482 Length=289922 Score = 325 bits (360), Expect = 6e-87 Identities = 228/257 (89%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| || | | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13237 CTCGCTGACCTCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 13178 Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA 122 |||||||||||||||||||||||||| | || |||||||||||||||||||| || Sbjct 13177 CTGTTATTGCCTCAAACTTCCATTGGTTAAAAACCAATAGTCCCTCTAAGAAGTTGCCCG 13118 Query 123 CCAACC-ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 | | | | || | | |||||||| ||||||||||||||||||||| ||||||||| Sbjct 13117 TGATTCGAAAATC-ACGTAACTATTTAGTAGGTTAAGGTCTCGTTCGTTAACGGAATTAA 13059 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13058 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 12999 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 12998 AGAGCTCTCAATCTGTC 12982 Score = 176 bits (194), Expect = 7e-42 Identities = 190/249 (76%), Gaps = 11/249 (4%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| || Sbjct 3635 CAGTGTAGCGCGCGTGCAGCCTCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCCA 3576 Query 77 AACTTCCATTGGCTGGAA----GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG 132 ||| ||||| || |||| | ||| |||||||| | | || | Sbjct 3575 T--TTCGTGTGGCTTAAAAAGTGCCACTTATCCTGCTAAGAAGTCTTGAAAAGTCCCTG- 3519 Query 133 TCGA---TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 ||| | | |||||||| | | |||||||||||||||| |||||| ||||||| Sbjct 3518 -CGAACTTTAGACTATTTAGTAAGCCGGAGTCTCGTTCGTTATCGAAATTAATCAGACAA 3460 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||| ||||| ||||| ||||||||||||||||| ||||||||||||||| | Sbjct 3459 ATCGCTCCACGAACTACGAACGACCATGCACCACCACCCACCTAATCAAGAAAGAGCTCT 3400 Query 250 CAATCTGTC 258 ||||||||| Sbjct 3399 CAATCTGTC 3391 >seq5180 Length=100460 Score = 158 bits (174), Expect = 2e-36 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| Sbjct 66811 CTATTTAGCAGAGGAGAGTCTCGTTCGTTATCGGAATTAACCAGACAGATCACTCCACCA 66870 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||| ||| ||||| |||||||||| |||||||||| Sbjct 66871 ACTAAGAACGGCCATGCACCACCGTCCACTGAATCGAGAAAGAGCTCTCAATCTGTC 66927 Score = 152 bits (168), Expect = 8e-35 Identities = 104/117 (89%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||| Sbjct 65127 CTATTTAGCAGAGGAGAGTCTCGTTCATTATCGGAATTAACCAGACAGATCACTCCACCA 65186 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||| ||| ||||| |||||||||| |||||||||| Sbjct 65187 ACTAAGAACGGCCATGCACCACCGTCCACTGAATCGAGAAAGAGCTCTCAATCTGTC 65243 Score = 84.2 bits (92), Expect = 3e-14 Identities = 56/61 (92%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CTC 75 || ||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| Sbjct 66427 CATTGTAGCGCGCGTGCGGCCCAGGGCATCTGAGGGCATCACAGACCTGTTATTGCTCTC 66486 Query 76 A 76 | Sbjct 66487 A 66487 Score = 80.6 bits (88), Expect = 4e-13 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CTC 75 || |||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||| Sbjct 64746 CATTGTAGCGCGCGTGCGGCCCATGACATCTGAGGACATCACAGACCTGTTATTGCTCTC 64805 Query 76 A 76 | Sbjct 64806 A 64806 >seq2991 Length=111259 Score = 158 bits (174), Expect = 2e-36 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| Sbjct 106120 CTATTTAGCAGAGGAGAGTCTCGTTCGTTATCGGAATTAACCAGACAGATCACTCCACCA 106061 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||| ||| ||||| |||||||||| |||||||||| Sbjct 106060 ACTAAGAACGGCCATGCACCACCGTCCACTGAATCGAGAAAGAGCTCTCAATCTGTC 106004 >seq3891 Length=713070 Score = 147 bits (162), Expect = 3e-33 Identities = 101/114 (89%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 145 TTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACT 204 |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 371753 TTTAGCAGAGGAGAGTCTCGTTCGTTATCGGAATTAACCAGACAGATCACTCCACCAACT 371812 Query 205 AAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||| ||| ||||| |||||||||| |||||| ||| Sbjct 371813 AAGAACGGCCATGCACCACCGTCCACTGAATCGAGAAAGAGCTCTCAATCCGTC 371866 >seq5535 Length=92255 Score = 145 bits (160), Expect = 1e-32 Identities = 92/100 (92%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 19303 GTCTCGTTCGTTATCGGAATTAACCAGACAGATCACTCCACCAACTAAGGACGGCCATGC 19362 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| ||| ||||| |||||||||| |||||||||| Sbjct 19363 ACCACCGTCCACTGAATCGAGAAAGAGCTCTCAATCTGTC 19402 >seq13336 Length=709859 Score = 114 bits (126), Expect = 2e-23 Identities = 100/120 (83%), Gaps = 6/120 (5%) Strand=Plus/Minus Query 142 CTATTTAGC-AGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG--ACAAATCACTCCA 198 ||||||||| ||| | |||||||||||| ||||||||||||| || ||||||||| Sbjct 706692 CTATTTAGCTAGGAGA--GTCTCGTTCGTT-TCGGAATTAACCACCAACGGATCACTCCA 706636 Query 199 CCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||||||||||||||||||| ||| ||||| ||||||||| |||||||||| Sbjct 706635 GCAAGTAAGAACGGCCATGCACCACCGTCCACTGAATCGCGAAAGAGCTCTCAATCTGTC 706576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796661058000