Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20]
18,000 sequences; 550,885,727 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq11482 325 6e-87
seq5180 158 2e-36
seq2991 158 2e-36
seq3891 147 3e-33
seq5535 145 1e-32
seq13336 114 2e-23
>seq11482
Length=289922
Score = 325 bits (360), Expect = 6e-87
Identities = 228/257 (89%), Gaps = 2/257 (1%)
Strand=Plus/Minus
Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62
|||| || | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13237 CTCGCTGACCTCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 13178
Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA 122
|||||||||||||||||||||||||| | || |||||||||||||||||||| ||
Sbjct 13177 CTGTTATTGCCTCAAACTTCCATTGGTTAAAAACCAATAGTCCCTCTAAGAAGTTGCCCG 13118
Query 123 CCAACC-ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181
| | | | || | | |||||||| ||||||||||||||||||||| |||||||||
Sbjct 13117 TGATTCGAAAATC-ACGTAACTATTTAGTAGGTTAAGGTCTCGTTCGTTAACGGAATTAA 13059
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13058 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 12999
Query 242 AGAGCTATCAATCTGTC 258
|||||| ||||||||||
Sbjct 12998 AGAGCTCTCAATCTGTC 12982
Score = 176 bits (194), Expect = 7e-42
Identities = 190/249 (76%), Gaps = 11/249 (4%)
Strand=Plus/Minus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| ||
Sbjct 3635 CAGTGTAGCGCGCGTGCAGCCTCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCCA 3576
Query 77 AACTTCCATTGGCTGGAA----GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG 132
||| ||||| || |||| | ||| |||||||| | | || |
Sbjct 3575 T--TTCGTGTGGCTTAAAAAGTGCCACTTATCCTGCTAAGAAGTCTTGAAAAGTCCCTG- 3519
Query 133 TCGA---TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189
||| | | |||||||| | | |||||||||||||||| |||||| |||||||
Sbjct 3518 -CGAACTTTAGACTATTTAGTAAGCCGGAGTCTCGTTCGTTATCGAAATTAATCAGACAA 3460
Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249
||| |||||| ||||| ||||| ||||||||||||||||| ||||||||||||||| |
Sbjct 3459 ATCGCTCCACGAACTACGAACGACCATGCACCACCACCCACCTAATCAAGAAAGAGCTCT 3400
Query 250 CAATCTGTC 258
|||||||||
Sbjct 3399 CAATCTGTC 3391
>seq5180
Length=100460
Score = 158 bits (174), Expect = 2e-36
Identities = 105/117 (90%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 66811 CTATTTAGCAGAGGAGAGTCTCGTTCGTTATCGGAATTAACCAGACAGATCACTCCACCA 66870
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||||||||||| ||| ||||| |||||||||| ||||||||||
Sbjct 66871 ACTAAGAACGGCCATGCACCACCGTCCACTGAATCGAGAAAGAGCTCTCAATCTGTC 66927
Score = 152 bits (168), Expect = 8e-35
Identities = 104/117 (89%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 65127 CTATTTAGCAGAGGAGAGTCTCGTTCATTATCGGAATTAACCAGACAGATCACTCCACCA 65186
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||||||||||| ||| ||||| |||||||||| ||||||||||
Sbjct 65187 ACTAAGAACGGCCATGCACCACCGTCCACTGAATCGAGAAAGAGCTCTCAATCTGTC 65243
Score = 84.2 bits (92), Expect = 3e-14
Identities = 56/61 (92%), Gaps = 1/61 (2%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CTC 75
|| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||
Sbjct 66427 CATTGTAGCGCGCGTGCGGCCCAGGGCATCTGAGGGCATCACAGACCTGTTATTGCTCTC 66486
Query 76 A 76
|
Sbjct 66487 A 66487
Score = 80.6 bits (88), Expect = 4e-13
Identities = 55/61 (90%), Gaps = 1/61 (2%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CTC 75
|| |||||||||||||||||||| |||||| ||| |||||||||||||||||||| |||
Sbjct 64746 CATTGTAGCGCGCGTGCGGCCCATGACATCTGAGGACATCACAGACCTGTTATTGCTCTC 64805
Query 76 A 76
|
Sbjct 64806 A 64806
>seq2991
Length=111259
Score = 158 bits (174), Expect = 2e-36
Identities = 105/117 (90%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 106120 CTATTTAGCAGAGGAGAGTCTCGTTCGTTATCGGAATTAACCAGACAGATCACTCCACCA 106061
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||||||||||| ||| ||||| |||||||||| ||||||||||
Sbjct 106060 ACTAAGAACGGCCATGCACCACCGTCCACTGAATCGAGAAAGAGCTCTCAATCTGTC 106004
>seq3891
Length=713070
Score = 147 bits (162), Expect = 3e-33
Identities = 101/114 (89%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 145 TTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACT 204
|||||||| | |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 371753 TTTAGCAGAGGAGAGTCTCGTTCGTTATCGGAATTAACCAGACAGATCACTCCACCAACT 371812
Query 205 AAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||| ||| ||||| |||||||||| |||||| |||
Sbjct 371813 AAGAACGGCCATGCACCACCGTCCACTGAATCGAGAAAGAGCTCTCAATCCGTC 371866
>seq5535
Length=92255
Score = 145 bits (160), Expect = 1e-32
Identities = 92/100 (92%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 19303 GTCTCGTTCGTTATCGGAATTAACCAGACAGATCACTCCACCAACTAAGGACGGCCATGC 19362
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||| ||| ||||| |||||||||| ||||||||||
Sbjct 19363 ACCACCGTCCACTGAATCGAGAAAGAGCTCTCAATCTGTC 19402
>seq13336
Length=709859
Score = 114 bits (126), Expect = 2e-23
Identities = 100/120 (83%), Gaps = 6/120 (5%)
Strand=Plus/Minus
Query 142 CTATTTAGC-AGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG--ACAAATCACTCCA 198
||||||||| ||| | |||||||||||| ||||||||||||| || |||||||||
Sbjct 706692 CTATTTAGCTAGGAGA--GTCTCGTTCGTT-TCGGAATTAACCACCAACGGATCACTCCA 706636
Query 199 CCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||| ||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||
Sbjct 706635 GCAAGTAAGAACGGCCATGCACCACCGTCCACTGAATCGCGAAAGAGCTCTCAATCTGTC 706576
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796661058000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |