Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq14174 210 4e-52 seq13487 194 3e-47 seq1 194 3e-47 seq10921 188 1e-45 seq11737 181 2e-43 seq1447 181 2e-43 >seq14174 Length=3265 Score = 210 bits (232), Expect = 4e-52 Identities = 204/261 (78%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 79 GATTTCTAACCGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACT 138 || ||||||||| | ||| || ||| ||||||||| |||| ||||||||||||| Sbjct 2086 GAATTCTAACCGATAGCCGT-TATCCGGCATCGGGACAGTTTCAGGTGGGCAGTTTGACT 2144 Query 139 GGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGA 198 ||||||||||||||| |||| ||||||||||||| ||||| | |||||| ||| |||| Sbjct 2145 GGGGCGGTCGCCTCCTAAAGTGTAACGGAGGCGCACAAAGGTTTCCTCAGGCTGGTTGGA 2204 Query 199 AACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCA 258 || || || | |||||||||||| |||| | ||||||| || | ||| || |||| Sbjct 2205 AATCAGCCGAAGAGTGCAAAGGCATAAGGAAGCTTGACTGTGAGAGTGACAACTCGAGCA 2264 Query 259 GGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGG 318 ||| |||| ||| |||| ||||||| ||| ||| ||||| |||||||||| |||| Sbjct 2265 GGGTGGAAACACGGTCTTAGTGATCCGACGGCAATGAGTGGAAGTGCCGTCGCTCAACGG 2324 Query 319 ATAAAAGCTACCCTGGGGATA 339 ||||||| ||| || |||||| Sbjct 2325 ATAAAAGTTACTCTAGGGATA 2345 >seq13487 Length=4875 Score = 194 bits (214), Expect = 3e-47 Identities = 233/312 (75%), Gaps = 5/312 (2%) Strand=Plus/Plus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGAT-TTCTAAC 88 |||||||| ||| |||||| ||| |||| |||| || | | || || ||||||| Sbjct 3073 ACGCCAGTTCTCATGGAGCCATCCTTGAAATACCACCC-TGATCTGTTTGAGGTTCTAAC 3131 Query 89 CGGACGACGTATAACCGTTGACGGG-ACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTC 147 | ||| || | | | |||| || ||| | |||||||||||||||||||||| Sbjct 3132 CTT--GACCCATTATCTGGGTCGGGGACCGTGCATGGTGGGCAGTTTGACTGGGGCGGTC 3189 Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 ||||| ||||||||||||||| || | ||| ||| || || || ||| | | | | Sbjct 3190 TCCTCCTAAAGAGTAACGGAGGAGCTCGAAGGTACGCTAAGTACGGTCGGACATCGTACT 3249 Query 208 CACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267 | ||||||| |||| ||| ||| |||||||||| || |||||| |||||| ||||| Sbjct 3250 GATAGTGCAATGGCATAAGCGTGCTTGACTGCGAGACTGACAAGTCGAGCAGGTGCGAAA 3309 Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327 | || | || |||||||| ||| |||||||||| |||| |||||| ||||||||||| | Sbjct 3310 GCAGGACATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGT 3369 Query 328 ACCCTGGGGATA 339 || ||||||||| Sbjct 3370 ACTCTGGGGATA 3381 >seq1 Length=2207822 Score = 194 bits (214), Expect = 3e-47 Identities = 232/311 (75%), Gaps = 3/311 (1%) Strand=Plus/Plus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGAT-TTCTAAC 88 |||| ||| | | |||||| |||| |||| |||| || ||| || || ||||||| Sbjct 518946 ACGCTAGTTTCTATGGAGCCAACGTTGAAATACCACCC-TGGTGTGTTTGAGGTTCTAAC 519004 Query 89 CGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCG 148 | ||| || ||| |||||||||| | |||||||||||||||||||||| Sbjct 519005 CTTGTCCCGT-TATCCGGGATGGGGACAGTGTATGGTGGGCAGTTTGACTGGGGCGGTCT 519063 Query 149 CCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGC 208 |||||||||| |||||||||| | | ||| ||| || | || ||||| | || Sbjct 519064 CCTCCCAAAGTGTAACGGAGGAGTTCGAAGGTACGCTAAATACGGTCGGAAATCGTGTTG 519123 Query 209 ACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAG 268 | |||||| |||| ||| ||| |||||||||| || |||||| |||||| ||||||| Sbjct 519124 ATAGTGCATTGGCATAAGCGTGCTTGACTGCGAGACTGACAAGTCGAGCAGGTACGAAAG 519183 Query 269 TCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTA 328 | || | | |||||||| ||| ||| |||||| |||| |||||| ||||||||||| || Sbjct 519184 TAGGACAAAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTA 519243 Query 329 CCCTGGGGATA 339 | ||||||||| Sbjct 519244 CTCTGGGGATA 519254 >seq10921 Length=25804 Score = 188 bits (208), Expect = 1e-45 Identities = 170/214 (79%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 ||| ||||||||||||| |||||||||| |||||||||||||||| ||||| | ||| Sbjct 4450 GGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTTCAAAGGTTTCCT 4509 Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 |||| | ||| |||| |||| ||||||| ||||||||| | |||||||||| || Sbjct 4510 CAGCACGCTTGGTAACCGTGCGATGAGTGCAATAGCAAAAGGGAGCTTGACTGCGAGACA 4569 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 |||||| | |||| |||||||| || || |||||||| ||| ||| |||||| ||| Sbjct 4570 AACAAGTCGAACAGGTACGAAAGTAGGATATAGTGATCCGGTGGTTCTGTATGGAAGGGC 4629 Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | |||||| | ||||||||| ||| | ||||||| Sbjct 4630 CATCGCTCAAAGGATAAAAGGTACTCCGGGGATA 4663 >seq11737 Length=277544 Score = 181 bits (200), Expect = 2e-43 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 |||||||| | ||| ||||||||||||| |||||||||| |||||||| ||||||| Sbjct 217291 GGACAGTGCGTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTATCGGAGGCT 217232 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 ||||| || |||||| |||||| || | | || | |||| || |||| |||| || Sbjct 217231 TTCAAAGGTATCCTCAGTACGGATGGTAATCGTACGTAGAGTGTAATGGCATAAGGATGC 217172 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 ||||||| || ||| |||||| |||||| |||||| || | || |||||||| ||| Sbjct 217171 TTGACTGTGAGACCTACAAGTCGAGCAGGTGCGAAAGCAGGACATAGTGATCCGGTGGTT 217112 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | |||||| |||| |||||| | ||||||||| ||| | ||||||| Sbjct 217111 CCGTATGGAAGGGCCATCGCTCAAAGGATAAAAGGTACGCCGGGGATA 217064 >seq1447 Length=1029730 Score = 181 bits (200), Expect = 2e-43 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 |||||||| | ||| ||||||||||||| |||||||||| |||||||| ||||||| Sbjct 759082 GGACAGTGCGTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTATCGGAGGCT 759141 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 ||||| || |||||| |||||| || | | || | |||| || |||| |||| || Sbjct 759142 TTCAAAGGTATCCTCAGTACGGATGGTAATCGTACGTAGAGTGTAATGGCATAAGGATGC 759201 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 ||||||| || ||| |||||| |||||| |||||| || | || |||||||| ||| Sbjct 759202 TTGACTGTGAGACCTACAAGTCGAGCAGGTGCGAAAGCAGGACATAGTGATCCGGTGGTT 759261 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | |||||| |||| |||||| | ||||||||| ||| | ||||||| Sbjct 759262 CCGTATGGAAGGGCCATCGCTCAAAGGATAAAAGGTACGCCGGGGATA 759309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982223168000