Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq11737 205 1e-50 seq1447 205 1e-50 seq10921 187 3e-45 seq13487 123 3e-26 seq1 114 1e-23 seq14174 104 3e-20 >seq11737 Length=277544 Score = 205 bits (226), Expect = 1e-50 Identities = 147/178 (83%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 217439 GGGTCTTTTCGTCCCACAGCGGGTAACCGGCATCTTCACCGATACTACAATTTCACCGAG 217498 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 |||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 217499 CTCATGGTTGAGACAGTGCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGA 217558 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 217559 CAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 217616 >seq1447 Length=1029730 Score = 205 bits (226), Expect = 1e-50 Identities = 147/178 (83%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 758934 GGGTCTTTTCGTCCCACAGCGGGTAACCGGCATCTTCACCGATACTACAATTTCACCGAG 758875 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 |||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 758874 CTCATGGTTGAGACAGTGCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGA 758815 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 758814 CAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 758757 >seq10921 Length=25804 Score = 187 bits (206), Expect = 3e-45 Identities = 144/180 (80%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||||| | ||||||| |||||||||||||| ||||||||||| | | Sbjct 4291 CGGGGTCTTTCCGTCCCGTGGCGGGTAGACGGCATCTTCACCGTCACTACAATTTCGCCG 4232 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 ||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 4231 AGCTCACGGCTGAGACAGTGCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCC 4172 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 4171 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 4112 >seq13487 Length=4875 Score = 123 bits (136), Expect = 3e-26 Identities = 117/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| |||||| | ||||| |||| | ||| ||| ||| |||| Sbjct 2997 GGGGTCTTTCCGTCTAGCCGCGGGGAGATTGCATCATCACAAACACTTCAACTTCGCTGA 2938 Query 84 G-CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | |||| || ||||||| ||| |||||||||||||||||||||||||| Sbjct 2937 GTCTCA-GGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 2879 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 2878 GACAAGGAATTTCGCTACCTTAGGACCGTTA 2848 >seq1 Length=2207822 Score = 114 bits (126), Expect = 1e-23 Identities = 115/151 (76%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| |||||| | ||||| |||| | | | ||| ||| |||| Sbjct 518870 GGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGA 518811 Query 84 GCTCAC-GGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | || ||||||| ||| |||||||||||||||||||||||||| Sbjct 518810 G-TCTCTGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 518752 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 518751 GACAAGGAATTTCGCTACCTTAGGACCGTTA 518721 >seq14174 Length=3265 Score = 104 bits (114), Expect = 3e-20 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || | |||||||| || | | | ||||| | ||| Sbjct 1960 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGTATCTTCACAGACAATCCTATTTCGCCGAG 1901 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 1900 C-CTCTCTCCGAGACAGCATCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 1842 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 1841 ACAAGGAATTTCGCTACCTTAGGACCGTTA 1812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547104582000