Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1 325 8e-87 seq11737 210 5e-52 seq1447 210 5e-52 seq10921 197 3e-48 >seq1 Length=2207822 Score = 325 bits (360), Expect = 8e-87 Identities = 277/337 (82%), Gaps = 6/337 (2%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| ||||||| | | |||||||||| ||||||||||| |||||| ||| Sbjct 515020 TTTACAACCCGAAGGCCTTCTTCC-CGCACGCGGCAT-GGCTGGATCAGACTTTCGTCCA 514963 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 514962 TTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 514903 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||| || |||||||||||||| ||| ||||||||||||||||||| ||||| ||| Sbjct 514902 GTGGCTGGTCGTCCTCTCAGACCAGCTACAGATCGTCGCCTTGGTGAGCTTTTACCCCAC 514843 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| ||| | ||| || |||||| ||| | | ||||| |||| Sbjct 514842 CAACTAGCTAATCTGACATCGGCCGCTCCAATAGCGAGAGGTCTTGCGATCCCCCCCTTT 514783 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCG--TTTCCGAACGTTATCCCCCACTACCA 299 | ||| |||| |||||||||||||| |||| |||| | ||||||||||||| Sbjct 514782 CACCCTTAGGTCGTATGCGGTATTA--ATCCGGCTTTCGCCGGGCTATCCCCCACTACTG 514725 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 |||| |||| | || |||||||||||| |||| ||| Sbjct 514724 GGCACGTTCCGATGCTTTACTCACCCGTTCGCCACTC 514688 Score = 325 bits (360), Expect = 8e-87 Identities = 277/337 (82%), Gaps = 6/337 (2%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| ||||||| | | |||||||||| ||||||||||| |||||| ||| Sbjct 520605 TTTACAACCCGAAGGCCTTCTTCC-CGCACGCGGCAT-GGCTGGATCAGACTTTCGTCCA 520548 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 520547 TTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 520488 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||| || |||||||||||||| ||| ||||||||||||||||||| ||||| ||| Sbjct 520487 GTGGCTGGTCGTCCTCTCAGACCAGCTACAGATCGTCGCCTTGGTGAGCTTTTACCCCAC 520428 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| ||| | ||| || |||||| ||| | | ||||| |||| Sbjct 520427 CAACTAGCTAATCTGACATCGGCCGCTCCAATAGCGAGAGGTCTTGCGATCCCCCCCTTT 520368 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCG--TTTCCGAACGTTATCCCCCACTACCA 299 | ||| |||| |||||||||||||| |||| |||| | ||||||||||||| Sbjct 520367 CACCCTTAGGTCGTATGCGGTATTA--ATCCGGCTTTCGCCGGGCTATCCCCCACTACTG 520310 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 |||| |||| | || |||||||||||| |||| ||| Sbjct 520309 GGCACGTTCCGATGCTTTACTCACCCGTTCGCCACTC 520273 >seq11737 Length=277544 Score = 210 bits (232), Expect = 5e-52 Identities = 175/210 (83%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAG-ACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||||| || ||| |||| | | ||||||| || |||||||||||||| || ||| Sbjct 220973 TTTACAATCCATAGGACCGTCTTCCTC-CACGCGGGAT-GGCTGGATCAGGCTCTCACCC 221030 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||| Sbjct 221031 ATTGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAG 221090 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| | ||| |||||||| || || |||||| ||| ||||||||| |||||||| Sbjct 221091 TGTGGGGGTTCACCCTCTCAGGCCCCCTAAAGATCGTAGCCATGGTGAGCCGTTACCTCA 221150 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCT 210 ||| |||||||||| || | || ||||| Sbjct 221151 CCATCTAGCTAATCTTACGCATGCCCATCT 221180 >seq1447 Length=1029730 Score = 210 bits (232), Expect = 5e-52 Identities = 175/210 (83%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAG-ACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||||| || ||| |||| | | ||||||| || |||||||||||||| || ||| Sbjct 755400 TTTACAATCCATAGGACCGTCTTCCTC-CACGCGGGAT-GGCTGGATCAGGCTCTCACCC 755343 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||| Sbjct 755342 ATTGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAG 755283 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| | ||| |||||||| || || |||||| ||| ||||||||| |||||||| Sbjct 755282 TGTGGGGGTTCACCCTCTCAGGCCCCCTAAAGATCGTAGCCATGGTGAGCCGTTACCTCA 755223 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCT 210 ||| |||||||||| || | || ||||| Sbjct 755222 CCATCTAGCTAATCTTACGCATGCCCATCT 755193 >seq10921 Length=25804 Score = 197 bits (218), Expect = 3e-48 Identities = 172/210 (82%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 2 TTTACAATCC-GAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||||| || |||| |||| | |||||||||| |||||| |||| || | || Sbjct 754 TTTACAATCCAGAGGACCGTCTTCCTG-CACGCGGCAT-GGCTGGGTCAGAGTTGCCTCC 697 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||| |||| Sbjct 696 ATTGCCCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGCCCGTATCTCAGTGCCAG 637 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| |||||||||| | || ||||||| |||||||| |||| |||||| | Sbjct 636 TGTGGGGGATACTCCTCTCAGAGCCCCTAAGGATCGTAGCCTTGGTAAGCCGTTACCTTA 577 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCT 210 ||||||||||||||| || | || ||||| Sbjct 576 CCAACTAGCTAATCCTACGCATGCCCATCT 547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071807040000