Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 2e-16 >seq1 Length=2207822 Score = 91.5 bits (100), Expect = 2e-16 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 ||| |||||||||||||| || | | || ||||| || || |||| ||||| || || Sbjct 2112499 GCCAGGTGCCGGCGCTTCCTCAATGATTTTTTGGTGGCGGCGCTGCATGGAGCAGTCACG 2112440 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 |||||||| || ||| | || || |||| | ||| | || | ||||| || || Sbjct 2112439 CTCGCCCAGCCAGACGGCATTGCGGTGCTCGTCCGCCAGGATCTGGATCTCCACATGGCG 2112380 Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTC 236 ||||| |||| |||| |||| |||||| ||||||||||| || || || || Sbjct 2112379 CGGGTTCTCCAGGAACTTCTCCATATAGACCTGGGGGTTGCCGAAGGCAGCACCGGCCTC 2112320 Query 237 GGAGCGAGTC 246 ||||| ||| Sbjct 2112319 AGAGCGGGTC 2112310 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 58 CCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGG 117 |||||||| || ||||||||||| ||||| |||||||| || |||| |||||| ||||| Sbjct 1622463 CCCGGTGCGGGGGCTTCTTCCAGCACCTTTTGGTGACGGCGCTGCACCGAGCAGTCGCGC 1622522 Query 118 TCGCCCAGGTGGATGGCGTGGCCC 141 ||| |||| || | || |||| Sbjct 1622523 TCGAAAAGGTAGACGCAGTCGCCC 1622546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735871660000