Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq13487 403 6e-110 seq1 309 1e-81 seq11737 302 2e-79 seq1447 302 2e-79 seq10921 300 6e-79 seq14174 297 7e-78 seq11482 77.0 1e-11 >seq13487 Length=4875 Score = 403 bits (446), Expect = 6e-110 Identities = 431/558 (77%), Gaps = 20/558 (4%) Strand=Plus/Minus Query 45 CACTTCCCGGCATTCGGAGTTTGGT-TGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCA 102 ||||| | || |||||||||||| || ||| |||||| | | | |||||||| ||| Sbjct 1831 CACTTACAGGTATTCGGAGTTTGCCATGGTTT-GGTAAGTCGCGATGACCCCCTAG-CCA 1774 Query 103 TC-CAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGA 161 | |||||||||||| || | | | | || ||| || |||||||| ||||||||| Sbjct 1773 TAACAGTGCTCTACCCCCTGTA-GTGAGACTCGAGGCACTACCTAAATAGTTTTCGGGGA 1715 Query 162 GAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAG 221 ||||||||||| | | |||| || ||||||||||||||||||||| ||||||||| | Sbjct 1714 GAACCAGCTATTTCCAGATTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAAC 1655 Query 222 TTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCAT 281 |||||||| | |||||||||||||||||| ||| |||||| |||||||||| |||| Sbjct 1654 TTTTCAACGTTAGTGGGTTCGGTCCTCCAGTTGGTGTTACCCAACCTTCAACCTGGCCAT 1595 Query 282 GGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGC 341 |||||||||| | | ||||||||| | | || ||| | ||||||||||||||||||| Sbjct 1594 GGATAGATCATCTGGTTTCGGGTCTACACCCAGCGACT-AGACGCCCTATTCGGACTCGC 1536 Query 342 TTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCA 401 |||||||||| || ||| || | |||||| || || || || | || |||| | | || Sbjct 1535 TTTCGCTACGCCTTCCCTACTC-GGTTAAGCTTGCCACTGAATG-TAAGTCGCTGACCCA 1478 Query 402 TTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGT 461 || | ||||||| ||||||||||| || |||| |||||||| | |||| Sbjct 1477 TTATACAAAAGGTACGCCGTCACC-----CCATAAAG------AGGCTCCGACTGTTTGT 1429 Query 462 AGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTC 521 | ||||| ||||||||| |||||||||||||| || ||||| |||||| |||||||||| Sbjct 1428 ATGCACACGGTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTC 1369 Query 522 ACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCA 581 |||||||| || | |||||||||| | |||||||||| ||| || ||||||| ||| Sbjct 1368 ACGGTACTAGTTCACTATCGGTCAGTCATGAGTATTTAGCCTTGGAGGATGGTCCCCCCA 1309 Query 582 GATTCACACGAAATTTCA 599 ||||| || |||||| Sbjct 1308 TATTCAGACAGGATTTCA 1291 >seq1 Length=2207822 Score = 309 bits (342), Expect = 1e-81 Identities = 409/553 (74%), Gaps = 27/553 (5%) Strand=Plus/Minus Query 52 CGGCATTCGGAGTTTGGT-TGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATC-CAGT 108 ||| |||||||||||| || ||| |||||| | | |||||||| |||| |||| Sbjct 517743 CGGTATTCGGAGTTTGCAATGGTTT-GGTAAGTCGCCATGACCCCCTAG-CCATAACAGT 517686 Query 109 GCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 |||||||| ||| | || || || || |||||||| |||||| ||||||||| Sbjct 517685 GCTCTACCCCCGATG-GTAATACTTGAGGCACTACCTAAATAGTTTTCGGAGAGAACCAG 517627 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT-CA 227 ||||| | | ||||| || ||||||||||||||||||||| |||||| || |||||| || Sbjct 517626 CTATCTCCAGGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCGCT-AGTTTTGCA 517568 Query 228 ACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAG 287 || ||| ||||||| |||||| || ||||| ||||| |||| |||||||||| Sbjct 517567 ACACTAGTCGGTTCGGACCTCCAGTGCGTGTTACCGCACCTTCATCCTGGCCATGGATAG 517508 Query 288 ATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGC 347 ||||| | | ||||||||| | | || ||| | |||||||||||||||||| |||| | Sbjct 517507 ATCACCTGGTTTCGGGTCTACACCCAGCGACT-AGACGCCCTATTCGGACTCGGTTTCCC 517449 Query 348 TACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTC 407 | || || ||| | | |||||| || || || || | || |||| | | |||| | | Sbjct 517448 TTCGCCTTCCCTATTC-GGTTAAGCTTGCCACTGAATG-TAAGTCGCTGACCCATTATAC 517391 Query 408 AAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTC-AGCTCCGACGGATTGTAGGCA 466 |||||| |||| ||||| ||| ||| ||||| || ||||| ||| Sbjct 517390 AAAAGGTACGCAGTCAC------CCT---------TTCGGGCTCCTACTTTTTGTATGCA 517346 Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 ||||||||| |||||||||||||| || ||||| |||||| ||||||||||||||| Sbjct 517345 TGCGGTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 517286 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTC 586 ||| || | ||||||||| | |||||||||| ||| || ||||||| ||| |||| Sbjct 517285 ACTAGTTCACTATCGGTCGATTACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTC 517226 Query 587 ACACGAAATTTCA 599 | || |||||| Sbjct 517225 AGACAGGATTTCA 517213 >seq11737 Length=277544 Score = 302 bits (334), Expect = 2e-79 Identities = 411/559 (74%), Gaps = 32/559 (6%) Strand=Plus/Plus Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGG-GCCCCCTAGACCATCCAGT-GCT 111 |||||||||||||| | | |||| || ||| |||||| ||| |||| ||| Sbjct 218491 GCATTCGGAGTTTGTCAGGAATTGGTAGGCG-GTGAAGCCCCCGCATCCAATCAGTAGCT 218549 Query 112 CTACCTCCGGGAAGAAAC-ACGCGA-CGCTGCACCTAAATGCATTTCGGGGAGAACCAGC 169 ||||||| |||| | || || ||||||||||||||||||||||||||| || ||| Sbjct 218550 CTACCTCTAT-AAGACTCTACCTGAGCGCTGCACCTAAATGCATTTCGGGGAGTACGAGC 218608 Query 170 TATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAAC 229 ||| | |||||||||||||||||||||||| ||||||||||||| | |||||||| Sbjct 218609 TATTTCCGAGTTTGATTGGCCTTTCACCCCTACCCACAGGTCATCCAAAGACTTTTCAAC 218668 Query 230 CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGAT 289 | | ||||||||||||||| || ||||| |||||||||||||||||| ||||| Sbjct 218669 GTCAACTGGTTCGGTCCTCCACTGTGTGTTACCACAGCTTCAACCTGCCCATGGGTAGAT 218728 Query 290 CACTTCGCTTCGGGTCTTGATCGTGCCACTCA----TACGCCCTATTCGGACTCGCTTTC 345 ||| | |||| ||| | ||| ||||| | | |||||||||| ||||||||||| Sbjct 218729 CACACGGTTTCGCGTC-TAATC---CCACTAACTATTTCGCCCTATTCAGACTCGCTTTC 218784 Query 346 GCTACGGCTAC---CCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCAT 402 ||||||||| | | || |||||||||| | | |||||| |||||||| Sbjct 218785 GCTACGGCTCCGGTGCTGAACACCTTAACCTCGCTA-GGGAGATTAACTCGTAGGCTCAT 218843 Query 403 TCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTA 462 | | |||||||||||||||||| | | ||| |||||||| | ||||| Sbjct 218844 TATGCAAAAGGCACGCCGTCAC-----ATCACGAAG------ATGCTCCGACCGCTTGTA 218892 Query 463 GGCACATGGTTTCAGGTACTATTTCA--CTCCCCGCCAGGGGTACTTTTCACCTTTCCCT 520 ||| | |||||||||| || ||||| || || || |||||||||||||||| Sbjct 218893 GGCGTACGGTTTCAGGTTCTCTTTCACCCTTTTATTCA-AAGTGCTTTTCACCTTTCCCT 218951 Query 521 CACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCC 580 ||||||||| || | ||||||||| | |||||||||||| ||| | |||||| || Sbjct 218952 CACGGTACTAGTTCACTATCGGTCTCTCAGGAGTATTTAGCCTTGGAAGATGGTCCTCCC 219011 Query 581 AGATTCACACGAAATTTCA 599 | ||||| || ||||||| Sbjct 219012 ATATTCAGACAGAATTTCA 219030 >seq1447 Length=1029730 Score = 302 bits (334), Expect = 2e-79 Identities = 411/559 (74%), Gaps = 32/559 (6%) Strand=Plus/Minus Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGG-GCCCCCTAGACCATCCAGT-GCT 111 |||||||||||||| | | |||| || ||| |||||| ||| |||| ||| Sbjct 757882 GCATTCGGAGTTTGTCAGGAATTGGTAGGCG-GTGAAGCCCCCGCATCCAATCAGTAGCT 757824 Query 112 CTACCTCCGGGAAGAAAC-ACGCGA-CGCTGCACCTAAATGCATTTCGGGGAGAACCAGC 169 ||||||| |||| | || || ||||||||||||||||||||||||||| || ||| Sbjct 757823 CTACCTCTAT-AAGACTCTACCTGAGCGCTGCACCTAAATGCATTTCGGGGAGTACGAGC 757765 Query 170 TATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAAC 229 ||| | |||||||||||||||||||||||| ||||||||||||| | |||||||| Sbjct 757764 TATTTCCGAGTTTGATTGGCCTTTCACCCCTACCCACAGGTCATCCAAAGACTTTTCAAC 757705 Query 230 CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGAT 289 | | ||||||||||||||| || ||||| |||||||||||||||||| ||||| Sbjct 757704 GTCAACTGGTTCGGTCCTCCACTGTGTGTTACCACAGCTTCAACCTGCCCATGGGTAGAT 757645 Query 290 CACTTCGCTTCGGGTCTTGATCGTGCCACTCA----TACGCCCTATTCGGACTCGCTTTC 345 ||| | |||| ||| | ||| ||||| | | |||||||||| ||||||||||| Sbjct 757644 CACACGGTTTCGCGTC-TAATC---CCACTAACTATTTCGCCCTATTCAGACTCGCTTTC 757589 Query 346 GCTACGGCTAC---CCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCAT 402 ||||||||| | | || |||||||||| | | |||||| |||||||| Sbjct 757588 GCTACGGCTCCGGTGCTGAACACCTTAACCTCGCTA-GGGAGATTAACTCGTAGGCTCAT 757530 Query 403 TCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTA 462 | | |||||||||||||||||| | | ||| |||||||| | ||||| Sbjct 757529 TATGCAAAAGGCACGCCGTCAC-----ATCACGAAG------ATGCTCCGACCGCTTGTA 757481 Query 463 GGCACATGGTTTCAGGTACTATTTCA--CTCCCCGCCAGGGGTACTTTTCACCTTTCCCT 520 ||| | |||||||||| || ||||| || || || |||||||||||||||| Sbjct 757480 GGCGTACGGTTTCAGGTTCTCTTTCACCCTTTTATTCA-AAGTGCTTTTCACCTTTCCCT 757422 Query 521 CACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCC 580 ||||||||| || | ||||||||| | |||||||||||| ||| | |||||| || Sbjct 757421 CACGGTACTAGTTCACTATCGGTCTCTCAGGAGTATTTAGCCTTGGAAGATGGTCCTCCC 757362 Query 581 AGATTCACACGAAATTTCA 599 | ||||| || ||||||| Sbjct 757361 ATATTCAGACAGAATTTCA 757343 >seq10921 Length=25804 Score = 300 bits (332), Expect = 6e-79 Identities = 419/573 (73%), Gaps = 37/573 (6%) Strand=Plus/Minus Query 29 CTCACAGCCGCGCTCTCACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTG 88 ||||| |||| ||| | ||| || ||||||||||||| ||| || |||| | | ||| Sbjct 3261 CTCACTGCCG-GCTATATCTTATCG-CATTCGGAGTTTGTCTGAATTTGGTAGGAT-GTG 3205 Query 89 GGCCCCCTAGA-CCATCCAGT-GCTCTACCTCCGGGAAGAAACA-CGC-GACGCTGCACC 144 |||| | ||| |||| |||||||||| | |||| || ||| ||||||| ||| Sbjct 3204 ACTCCCCCGCATCCAATCAGTAGCTCTACCTC-GATAAGACTCAACGCCGACGCTGTACC 3146 Query 145 TAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCC 204 ||||| |||||||||||| || |||||| | ||||||||| |||||||||||||| || Sbjct 3145 TAAATACATTTCGGGGAGTACGAGCTATTTCCCAGTTTGATTAGCCTTTCACCCCTACCC 3086 Query 205 ACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCG 264 |||| |||||| || |||||||| || ||| |||||||||| |||||||||| Sbjct 3085 ACAGTTCATCCGAACACTTTTCAACGTATACCGGTACGGTCCTCCAGTTGGTCTTACCCA 3026 Query 265 CGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATAC 324 |||||||||| |||||| ||||||||| | |||| |||| | | ||| | || Sbjct 3025 ACCTTCAACCTGACCATGGGTAGATCACTAGGTTTCGCGTCTACAGCCACAAACTTA-AC 2967 Query 325 GCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG-----GTTAACCTCGCGAC 379 ||||||||| |||||||||||||| ||||| || | | | |||||||||| Sbjct 2966 GCCCTATTCAGACTCGCTTTCGCTTCGGCT--CCGATTCTGAAAATCTTAACCTCGCTTG 2909 Query 380 ACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGG 439 | || |||||| ||| ||||| | ||||||||||||||||||| | | | Sbjct 2908 TGACCG-TAACTCGTAGGATCATTATGCAAAAGGCACGCCGTCACC--------ATATCG 2858 Query 440 CACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC-----TCCCC 494 || |||||||| | |||||||| | |||||||||| || |||||| | | | Sbjct 2857 CA---TGGCTCCGACCGCTTGTAGGCGTACGGTTTCAGGTTCTTTTTCACCCGGATACTC 2801 Query 495 GCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGT 554 || || |||||||||||||| |||| |||||||| |||||||||| | || ||| Sbjct 2800 TCC----GTGCTTTTCACCTTTCCTTCACAGTACTTGTTCGCTATCGGTGTCTCAGTAGT 2745 Query 555 ATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 |||||| ||| | | |||| | ||| ||||| Sbjct 2744 ATTTAGCCTTGGCAGATGGTGCTGCCGAATTCA 2712 >seq14174 Length=3265 Score = 297 bits (328), Expect = 7e-78 Identities = 351/471 (75%), Gaps = 26/471 (6%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || ||||||||||||||||||||| | | ||| ||||||| ||||| Sbjct 772 CGCTGCGCCTCAACACATTTCGGGGAGAACCAGCTAGCTCCCGGTTCGATTGGCATTTCA 713 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||||| |||||| | | |||||||| | || ||||||| ||||||| Sbjct 712 CCCCTAACCACACCTCATCCGCCGATTTTTCAACATCGGTCGGTTCGGACCTCCACTTAA 653 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGC 315 | |||| | |||||| |||| ||||| |||||||| | ||||||||| | Sbjct 652 TGTTACTCAAGCTTCATCCTGGACATGGTTAGATCACCGGGGTTCGGGTCTATAAA---- 597 Query 316 CACTCATA--CGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCA--CACGGGTTAAC 371 |||| || |||||||||| |||||||||||||| |||| | || | || ||||| Sbjct 596 CACTGATTATCGCCCTATTCAGACTCGCTTTCGCTTTGGCTTCGACATTCTCGTCTTAAC 537 Query 372 CTCGCGACACAACGCA---AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGG 428 || || || || || |||| |||||||||||||| |||||| |||||||| | Sbjct 536 CT----AC-CAGTGCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACACCGTCACCCGT 482 Query 429 TACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCA 488 | ||| || ||||||| | ||||| || ||||||||| || |||||||| Sbjct 481 T---TAATCGG-------GCTCCGATTGCTTGTAAGCTGATGGTTTCATGTTCTATTTCA 432 Query 489 CTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCA 548 |||||| || ||||| ||||||||||||||||| ||||||| | ||||||||||||| Sbjct 431 CTCCCCTCCCGGGGTTCTTTTCACCTTTCCCTCGCGGTACTGTTTCGCTATCGGTCACAC 372 Query 549 AGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||||||| ||| |||||||| |||||||||| |||| || Sbjct 371 AGGAGTATTTAGCCTTTCGAGGTGGTCCTCGATGATTCACACGGAATTCCA 321 >seq11482 Length=289922 Score = 77.0 bits (84), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 2/76 (3%) Strand=Plus/Minus Query 470 GGTTTCAGGTACTATTTCACTCCC-CGCCAGGGGTACTTTTCACCTTTCCCTCACGGTAC 528 ||||| | ||||||||| |||| | | ||| | | ||||||| |||||||||||||||| Sbjct 5099 GGTTTTACGTACTATTTAACTCTCTCTTCAGAG-TGCTTTTCAACTTTCCCTCACGGTAC 5041 Query 529 TTGTCCGCTATCGGTC 544 |||| ||||||||||| Sbjct 5040 TTGTTCGCTATCGGTC 5025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817272832000