Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1447 192 1e-46 seq11737 190 4e-46 seq1 181 2e-43 seq10921 152 1e-34 >seq1447 Length=1029730 Score = 192 bits (212), Expect = 1e-46 Identities = 224/298 (75%), Gaps = 7/298 (2%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||| | || |||||||| |||||| || |||||||||||||||||||||||| Sbjct 755362 GCTGGATCAGGCTCTCACCCATTGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCT 755303 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || |||||||||||| ||| ||||| ||||| |||||||| || ||| |||||| | Sbjct 755302 GGTCCGTGTCTCAGTACCAGTGTGGGGGTTCACCCTCTCAGGCCCCCTAAAGATCGTAGC 755243 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATA 186 | ||||| || ||| ||||||| ||| |||||| ||| |||||||| || ||||| Sbjct 755242 CATGGTGAGCCGTTACCTCACCATCTAGCTAATCTTACGCATGCCCATCTCTCTCCGATA 755183 Query 187 AATCTTT--GGTC-AAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTT 243 ||||||| || ||| ||| || | | || ||||| ||||||| |||| Sbjct 755182 AATCTTTCAAATCTAAACCATG-TGGCCTAAACT---ATTATAAGGTATTAATCCACGTT 755127 Query 244 TCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCC 301 |||| | ||| || | ||||| ||||||| ||| ||||| ||||||| |||| Sbjct 755126 TCCATGGGCTATCCCTTTGAAAAAGGTAGGTTGCATACGCGTTACGCACCCGTGCGCC 755069 >seq11737 Length=277544 Score = 190 bits (210), Expect = 4e-46 Identities = 224/300 (75%), Gaps = 11/300 (4%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||| | || |||||||| |||||| || |||||||||||||||||||||||| Sbjct 221011 GCTGGATCAGGCTCTCACCCATTGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCT 221070 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || |||||||||||| ||| ||||| ||||| |||||||| || ||| |||||| | Sbjct 221071 GGTCCGTGTCTCAGTACCAGTGTGGGGGTTCACCCTCTCAGGCCCCCTAAAGATCGTAGC 221130 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATA 186 | ||||| || ||| ||||||| ||| |||||| ||| |||||||| || ||||| Sbjct 221131 CATGGTGAGCCGTTACCTCACCATCTAGCTAATCTTACGCATGCCCATCTCTCTCCGATA 221190 Query 187 AATCTTTGGTCAAA---GAATGATGCCATCCTCTGA--CATTATGCGGTATTAGCGTTCG 241 |||||| ||||| || ||| | ||| | ||||| ||||||| || Sbjct 221191 AATCTT---TCAAATCTAAACCATG---TGGTCTAAACTATTATAAGGTATTAATCCACG 221244 Query 242 TTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCC 301 |||||| | ||| || | ||||| ||||||| ||| ||||| ||||||| |||| Sbjct 221245 TTTCCATGGGCTATCCCTTTGAAAAAGGTAGGTTGCATACGCGTTACGCACCCGTGCGCC 221304 >seq1 Length=2207822 Score = 181 bits (200), Expect = 2e-43 Identities = 136/160 (85%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||| |||| ||||||| ||| || ||||||||||||||||||||| Sbjct 514989 GGCATGGCTGGATCAGACTTTCGTCCATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAG 514930 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | || |||||||| || ||||| ||| Sbjct 514929 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACAGAT 514870 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||||| ||||||| ||| ||| | ||||||||| |||||| Sbjct 514869 CGTCGCCTTGGTGAGCTTTTACCCCACCAACTAGCTAATC 514830 Score = 181 bits (200), Expect = 2e-43 Identities = 136/160 (85%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||| |||| ||||||| ||| || ||||||||||||||||||||| Sbjct 520574 GGCATGGCTGGATCAGACTTTCGTCCATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAG 520515 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | || |||||||| || ||||| ||| Sbjct 520514 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACAGAT 520455 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||||| ||||||| ||| ||| | ||||||||| |||||| Sbjct 520454 CGTCGCCTTGGTGAGCTTTTACCCCACCAACTAGCTAATC 520415 >seq10921 Length=25804 Score = 152 bits (168), Expect = 1e-34 Identities = 215/301 (71%), Gaps = 1/301 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||| ||| || |||||| |||||| ||| ||||||||||||||||| Sbjct 722 GGCATGGCTGGGTCAGAGTTGCCTCCATTGCCCAATATTCCCTACTGCTGCCTCCCGTAG 663 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||| ||||||| ||| ||||| | | |||||||| | ||| ||| Sbjct 662 GAGTCTGGCCCGTATCTCAGTGCCAGTGTGGGGGATACTCCTCTCAGAGCCCCTAAGGAT 603 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||| | |||||| || ||| || |||||||| |||||| ||| |||||||| Sbjct 602 CGTAGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATCCTACGCATGCCCATCTACAT 543 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 | |||||| ||| || | |||||||| | | |||||||||| ||| Sbjct 542 CCTATAAATATTTCAATAATCTACGATGCCAT-AAATTATATTATGCGGTGTTAATCCCA 484 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| | | ||| || || ||| ||||||| ||| ||||| ||||||| ||| Sbjct 483 GTTTCCTAGGGCTATCCCCCTGATGTAGGTAGGTTGCATACGCGTTACGCACCCGTTCGC 424 Query 301 C 301 | Sbjct 423 C 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998220288000