Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq14174 208 2e-51 seq1 152 1e-34 seq13487 141 2e-31 seq11737 116 9e-24 seq1447 116 9e-24 seq10921 105 2e-20 >seq14174 Length=3265 Score = 208 bits (230), Expect = 2e-51 Identities = 300/409 (73%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || ||||||||||||| ||||||| |||| || ||| | | | | Sbjct 1305 CGACTACGCGTTTCCGCCTCGCCTTAGGTCCCGACTAACCCTCCGCGGACGAGCCTTCCG 1246 Query 61 CTGGAACCCTT-GGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCC 118 ||||||||| |||| || | | | |||||| |||| | ||||||||| ||| Sbjct 1245 GAGGAACCCTTAGGATT-TCAGGGCATTGGATTCTCACCAATGTTTGCGCTACTCAAGCC 1187 Query 119 TGCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACA 176 |||||||||| ||| || ||||| || | | | ||||| | ||| | Sbjct 1186 GACATTCTCACTTCCGCTTCG--TCCAC-ACCTGCTTTCGCTAATGCTTCTC-ACTACAA 1131 Query 177 CG--ACGCTCCCCTACCCAA----CCACACAGGT-TGCCACAGCTTCGGCGGATAACTTA 229 || ||||||||||||| | | | | | | | |||||||||||| | | |||| Sbjct 1130 CGGAACGCTCCCCTACCGATATATCGATAGACATATCCCACAGCTTCGGTACACACCTTA 1071 Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289 |||||| | |||| ||||||| | | | ||||||||||||||||||||||||||||| | Sbjct 1070 -GCCCCGTT-CATTTTCGGCGCAGGAGCGCTTGACCAGTGAGCTATTACGCACTCTTTTA 1013 Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349 |||||||||||||| | || |||||||||||||||| ||| |||| |||||| ||| Sbjct 1012 AGGATGGCTGCTTCTAGGCAAACCTCCTGGTTGTCTTTGCACTCCCACCTCCTTTATCAC 953 Query 350 TGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 |||| | || ||| ||||||||| || |||||||||||||||||| Sbjct 952 TGAGGTGTGATTTGGGGACCTTAGCTGGTGGTCTGGGCTGTTTCCCTCT 904 >seq1 Length=2207822 Score = 152 bits (168), Expect = 1e-34 Identities = 286/408 (70%), Gaps = 22/408 (5%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||||| || || ||| | | | Sbjct 518191 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCGTAG 518132 Query 64 GAACCCTTG-GATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCTGC 121 ||| ||||| | | | ||||| ||| || ||||| | |||||||||||| | || Sbjct 518131 GAAACCTTGCGCTTA-CGGCGAGGGGGCTTTTCACCCCCTTTAACGCTACTCATGTCAGC 518073 Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGA 179 |||| |||| | || | ||||| || || |||| || |||| | || ||| | Sbjct 518072 ATTCGCACTTCTGAT-ACCTCCAGCAGACC-TCACGATCCACCTTCGCAGGCTTACAGAA 518015 Query 180 CGCTCCCCTACCCAACCACACAGGTTGCCA-----CAGCTTCGGCGGATAACT---TAAG 231 ||||| |||||| | | | || | ||||||||| ||||| | || Sbjct 518014 CGCTCTCCTACCACTTGCTATTGCTAGCAAATCCGCAGCTTCGG----TAACTGGCTTAG 517959 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| ||||| || |||| | | ||| || |||||||||||||||| ||||| || Sbjct 517958 CCCCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAT 517899 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| |||||||| ||||| ||| | || |||| || ||||||||| Sbjct 517898 GGTGGCTGCTTCTAAGCCAACATCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACTT 517839 Query 352 AGTCACCACTTAGGGG-CCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || || | || |||| ||||||||| | |||||| ||||||||||| Sbjct 517838 AGCCA--ATTTTGGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 517793 >seq13487 Length=4875 Score = 141 bits (156), Expect = 2e-31 Identities = 281/405 (69%), Gaps = 16/405 (4%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| |||||| |||| || || ||| | | | Sbjct 2272 CTACGCATTTCTGCCTCGCCTTAGGGGCCGACTAACCCTACGCCGATGAACGTTGCGTAG 2213 Query 64 GAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCTGCA 122 ||| |||||| ||||| | | | ||| | || ||||||||||| | ||| Sbjct 2212 GAAACCTTGGGCTTACGGCGACAGAGCCTTTCACTCTGTTTATCGCTACTCATGTCAGCA 2153 Query 123 TTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGAC 180 ||| |||| | || | ||||| || | | || || |||| | || ||| || Sbjct 2152 TTCGCACTTCTGAT-ACCTCCAGCATGCTTT-ACAACACACCTTCGCAGGCTTACAGAAC 2095 Query 181 GCTCCCCTACC-CAACCACACAGGTTGCCA----CAGCTTCGGCGGATAACT--TAAGCC 233 ||||||||||| || ||| || || ||||||||| || || | |||| Sbjct 2094 GCTCCCCTACCACATACACTTGCGTGTACATCCGCAGCTTCGGT---TATCTGCTTAGCC 2038 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| ||||| || |||| | | ||| || |||||||||||||||| ||||| |||| Sbjct 2037 CCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAGGG 1978 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| |||||||||||||| ||| | || |||| || ||| ||||| || Sbjct 1977 TGGCTGCTTCTAAGCCAACCTCCTGACTGTTTTAGCCTTCCCACTTCGTTTTCCACTTAG 1918 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || |||||| ||||||||| | |||||| ||||||||||| Sbjct 1917 -CAGATATTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 1874 >seq11737 Length=277544 Score = 116 bits (128), Expect = 9e-24 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 181 GCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTAC 240 |||||||||||||| || ||| | |||||||| |||| | |||||| Sbjct 218222 GCTCCCCTACCCAAGATTACTC-TTGACTAAGCTTCGGTACTATACTTTATGCCCGCTT- 218279 Query 241 ATTATCGGCGCG-GAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCT 298 ||||||| || | | || |||||||||||| ||||||||||||| || || ||||| Sbjct 218280 ATTATCGATGCCCGCCCCGCTCGACCAGTGAGCTGTTACGCACTCTTTAAATGAATGGCT 218339 Query 299 GCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTC--CCACTGAGTCA 356 |||||||||||||| |||| | |||| | |||| | || | ||| | ||| || Sbjct 218340 GCTTCCAAGCCAACATCCTAGCTGTCAATGCAATCCAACCGCGTTTTTTCAACTTAGCAT 218399 Query 357 CCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || ||| |||||||||||| |||||| | ||||||||||| Sbjct 218400 ACATTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCCTCTCG 218443 >seq1447 Length=1029730 Score = 116 bits (128), Expect = 9e-24 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 181 GCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTAC 240 |||||||||||||| || ||| | |||||||| |||| | |||||| Sbjct 758151 GCTCCCCTACCCAAGATTACTC-TTGACTAAGCTTCGGTACTATACTTTATGCCCGCTT- 758094 Query 241 ATTATCGGCGCG-GAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCT 298 ||||||| || | | || |||||||||||| ||||||||||||| || || ||||| Sbjct 758093 ATTATCGATGCCCGCCCCGCTCGACCAGTGAGCTGTTACGCACTCTTTAAATGAATGGCT 758034 Query 299 GCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTC--CCACTGAGTCA 356 |||||||||||||| |||| | |||| | |||| | || | ||| | ||| || Sbjct 758033 GCTTCCAAGCCAACATCCTAGCTGTCAATGCAATCCAACCGCGTTTTTTCAACTTAGCAT 757974 Query 357 CCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || ||| |||||||||||| |||||| | ||||||||||| Sbjct 757973 ACATTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCCTCTCG 757930 >seq10921 Length=25804 Score = 105 bits (116), Expect = 2e-20 Identities = 160/223 (72%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 181 GCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTAC 240 |||||||||||||| || ||| | |||||||| |||| | |||||| Sbjct 3506 GCTCCCCTACCCAAGATTACTC-TTGACTAAGCTTCGGTACTATACTTTATGCCCGCTT- 3449 Query 241 ATTATCGGCGCG-GAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTG 299 ||||||| || | | || |||||||||||| ||||||||||||| || ||| |||| Sbjct 3448 ATTATCGATGCCCGCCCCGCTCGACCAGTGAGCTGTTACGCACTCTTTAAATGATTGCTG 3389 Query 300 CTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTT--TCCCACTGAGTCAC 357 ||||||||| ||| |||||| ||||| ||| || ||||| | | ||| ||| Sbjct 3388 CTTCCAAGCAAACATCCTGGCTGTCTCGGCAGTCAGACTTCCTTTGTTCAACTTAGTATA 3329 Query 358 CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | || | | ||||||||| | |||||| | ||||||||||| Sbjct 3328 GATTTGGAGACCTTAGCTGTAGTTCTGGGTTCTTTCCCTCTCG 3286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177388032000