Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1 223 3e-56 seq11737 129 5e-28 seq1447 129 5e-28 seq10921 118 9e-25 >seq1 Length=2207822 Score = 223 bits (246), Expect = 3e-56 Identities = 146/161 (91%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| | ||||||||||||| ||||||||||| ||||||||||||| Sbjct 515907 TCGAGTTGCAGACTGCGATCCGGACTACGACCGGTTTTCTGGGATTGGCTCCCCCTCGCG 515848 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 515847 GGTTGGCAGCCCTCTGTACCGGCCATTGTATGACGTGTGTAGCCCTACCCATAAGGGCCA 515788 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||| ||||||||||||||||||||||||||||||||| Sbjct 515787 TGAGGACCTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 515747 >seq11737 Length=277544 Score = 129 bits (142), Expect = 5e-28 Identities = 125/158 (79%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| ||||||| ||| || | |||| | ||| || | ||||||| Sbjct 220095 TCGAGTTGCAGACTCCAATCCGAACTGAGACAGGCTTTGAAG-ATTCGCATCACCTCGCG 220153 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || |||||||||| | ||||||||| ||||||| ||||| | | |||||||| Sbjct 220154 GTGTAGCTGCCCTCTGTACCTGCCATTGTATCACGTGTGTAGCCCAAGGCGTAAGGGCCG 220213 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTG 157 ||| ||||||||||| |||||||||||||| | ||||| Sbjct 220214 TGATGACTTGACGTCGTCCCCACCTTCCTCTCAGTTTG 220251 >seq1447 Length=1029730 Score = 129 bits (142), Expect = 5e-28 Identities = 125/158 (79%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| ||||||| ||| || | |||| | ||| || | ||||||| Sbjct 756278 TCGAGTTGCAGACTCCAATCCGAACTGAGACAGGCTTTGAAG-ATTCGCATCACCTCGCG 756220 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || |||||||||| | ||||||||| ||||||| ||||| | | |||||||| Sbjct 756219 GTGTAGCTGCCCTCTGTACCTGCCATTGTATCACGTGTGTAGCCCAAGGCGTAAGGGCCG 756160 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTG 157 ||| ||||||||||| |||||||||||||| | ||||| Sbjct 756159 TGATGACTTGACGTCGTCCCCACCTTCCTCTCAGTTTG 756122 >seq10921 Length=25804 Score = 118 bits (130), Expect = 9e-25 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||| ||||||| ||| |||| |||| || |||| ||| | || | Sbjct 1637 TCGAGTTGCAGACCCCAATCCGAACTGTGATAGGCTTTTTGTGATTCGCTTACTCTTACA 1578 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || || ||||||| |||||||||| ||||||| |||||| | ||||||||| Sbjct 1577 AGCTCGCTGCACTCTGTACCTACCATTGTAGCACGTGTGTCGCCCTAGGCGTAAGGGCCA 1518 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC 150 ||| ||| ||||||| ||||| |||||||| Sbjct 1517 TGATGACCTGACGTCGTCCCCTCCTTCCTC 1488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415927460000