Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq1 239 7e-61 seq10921 214 3e-53 seq11737 174 3e-41 seq1447 174 3e-41 >seq1 Length=2207822 Score = 239 bits (264), Expect = 7e-61 Identities = 227/290 (78%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | ||||||||| | |||| |||||||||| ||||| Sbjct 515363 CCCACGCTTTCGTGCATGAGCGTCAGTGCAGGCCCAGGGGATTGCCTTCGCCATCGGTGT 515304 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 ||||||| ||||||||||||||||| ||||||| ||||||||| ||||| | |||| Sbjct 515303 TCCTCCGCATATCTACGCATTTCACTGCTACACGCGGAATTCCATCCCCCTCTGCCGCAC 515244 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| | |||| |||| |||| |||||||||| | |||||| |||| || Sbjct 515243 TCAAGCTATGCAGTCACAAAGGCAGTTCCCAGGTTGAGCCCGGGGATTTCACCTCTGTCT 515184 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | | |||||| | | | |||||| |||| ||| |||| |||||||||| |||||| Sbjct 515183 TACATAACCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTACG 515124 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 515123 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGTA 515074 Score = 239 bits (264), Expect = 7e-61 Identities = 227/290 (78%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | ||||||||| | |||| |||||||||| ||||| Sbjct 520948 CCCACGCTTTCGTGCATGAGCGTCAGTGCAGGCCCAGGGGATTGCCTTCGCCATCGGTGT 520889 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 ||||||| ||||||||||||||||| ||||||| ||||||||| ||||| | |||| Sbjct 520888 TCCTCCGCATATCTACGCATTTCACTGCTACACGCGGAATTCCATCCCCCTCTGCCGCAC 520829 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| | |||| |||| |||| |||||||||| | |||||| |||| || Sbjct 520828 TCAAGCTATGCAGTCACAAAGGCAGTTCCCAGGTTGAGCCCGGGGATTTCACCTCTGTCT 520769 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | | |||||| | | | |||||| |||| ||| |||| |||||||||| |||||| Sbjct 520768 TACATAACCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTACG 520709 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 520708 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGTA 520659 >seq10921 Length=25804 Score = 214 bits (236), Expect = 3e-53 Identities = 218/283 (77%), Gaps = 1/283 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || |||||||||||| | ||||| | |||||||| | ||| | Sbjct 1092 CCCACGCTTTCGTGCATCAGCGTCAGTTTATTCGTAGCAACCTGCCTTCGCAATCGGTAT 1033 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| | |||||| ||||||||||||||||| | ||||| |||||| | | Sbjct 1032 TCCTTCCGGTATCTATGCATTTCACCGCTACACCGGAAATTCTAGCTGCCTCCAAATATC 973 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGG-GTTGAGCCCATAGTTTTCACATCTGAC 179 ||||| |||||| || | ||| | | ||| ||| || |||| || | ||| Sbjct 972 TCAAGCTCAACAGTATCGATGGCATGTAAAACAGTTAAGCTGCTACTTTTAACCACCGAC 913 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || |||||||| | ||||||| ||||||||||||||||||||||| ||||||||| Sbjct 912 TTATTAAGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCACCTAC 853 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 852 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 810 >seq11737 Length=277544 Score = 174 bits (192), Expect = 3e-41 Identities = 219/289 (76%), Gaps = 14/289 (5%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCC-AGCAATCCGCCTTCGCCACTGGTG 59 |||||||||||| | |||| ||||||| ||| || || | |||||||| | ||| Sbjct 220636 CCCACGCTTTCGTCCATCAGTGTCAGTTGA-GTCTTAGTAACCTGCCTTCGCAATCGGTA 220694 Query 60 TTCCTCCGTA-TATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAG- 117 ||| | ||| |||||| ||||||||||||||||| |||| | || || || Sbjct 220695 TTC-TATGTAATATCTATGCATTTCACCGCTACACTACATATTC---TAGCTACTTCAAA 220750 Query 118 --CACTCAAGAAAAACAGTTTCAAATGCAGG-CTATGGGTTGAGCCCATAGT-TTTCACA 173 |||||||| | |||| |||| |||| |||| | || ||| |||| |||||| Sbjct 220751 CTCACTCAAGGCTAGCAGTATCAATGGCAGTTCTATCG-TTAAGCG-ATAGGCTTTCACC 220808 Query 174 TCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCC 233 ||||||| | ||| ||||| ||||||| |||||||||||||||||||||||||| Sbjct 220809 ACTGACTTACAAGCCCACCTACGGACCCTTTAAACCCAATAAATCCGGATAACGCTTGCA 220868 Query 234 ACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||| |||||||||||||||||||||||| ||||||||| |||||||| Sbjct 220869 CCCTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTATTC 220917 >seq1447 Length=1029730 Score = 174 bits (192), Expect = 3e-41 Identities = 219/289 (76%), Gaps = 14/289 (5%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCC-AGCAATCCGCCTTCGCCACTGGTG 59 |||||||||||| | |||| ||||||| ||| || || | |||||||| | ||| Sbjct 755737 CCCACGCTTTCGTCCATCAGTGTCAGTTGA-GTCTTAGTAACCTGCCTTCGCAATCGGTA 755679 Query 60 TTCCTCCGTA-TATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAG- 117 ||| | ||| |||||| ||||||||||||||||| |||| | || || || Sbjct 755678 TTC-TATGTAATATCTATGCATTTCACCGCTACACTACATATTC---TAGCTACTTCAAA 755623 Query 118 --CACTCAAGAAAAACAGTTTCAAATGCAGG-CTATGGGTTGAGCCCATAGT-TTTCACA 173 |||||||| | |||| |||| |||| |||| | || ||| |||| |||||| Sbjct 755622 CTCACTCAAGGCTAGCAGTATCAATGGCAGTTCTATCG-TTAAGCG-ATAGGCTTTCACC 755565 Query 174 TCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCC 233 ||||||| | ||| ||||| ||||||| |||||||||||||||||||||||||| Sbjct 755564 ACTGACTTACAAGCCCACCTACGGACCCTTTAAACCCAATAAATCCGGATAACGCTTGCA 755505 Query 234 ACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||| |||||||||||||||||||||||| ||||||||| |||||||| Sbjct 755504 CCCTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTATTC 755456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828655478000