Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq13487 190 1e-46 seq1 167 2e-39 seq11737 145 5e-33 seq1447 145 5e-33 seq10921 132 3e-29 seq14174 100 2e-19 >seq13487 Length=4875 Score = 190 bits (210), Expect = 1e-46 Identities = 126/140 (90%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||| Sbjct 3370 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGTCCTG 3311 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||||| |||||| | |||| ||||||| |||||||| ||| |||||||||||||| Sbjct 3310 CTTTCGCACCTGCTCGACTTGTCAGTCTCGCAGTCAAGCACGCTTATGCCATTGCACTAT 3251 Query 121 CACTACGATTTCCGACCGTA 140 || |||||| |||||||||| Sbjct 3250 CAGTACGATGTCCGACCGTA 3231 >seq1 Length=2207822 Score = 167 bits (184), Expect = 2e-39 Identities = 121/140 (86%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | ||||||||||||| || ||| Sbjct 519243 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTTTGTCCTA 519184 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | |||| ||||||| |||||||| ||| ||||| |||||||| Sbjct 519183 CTTTCGTACCTGCTCGACTTGTCAGTCTCGCAGTCAAGCACGCTTATGCCAATGCACTAT 519124 Query 121 CACTACGATTTCCGACCGTA 140 || |||||||||||||||| Sbjct 519123 CAACACGATTTCCGACCGTA 519104 >seq11737 Length=277544 Score = 145 bits (160), Expect = 5e-33 Identities = 116/140 (83%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| | | |||||||||||||||| |||| Sbjct 217075 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATACGGAACCACCGGATCACTATGTCCTG 217134 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||||| |||||| | |||| | |||| || ||||||| ||| ||||||| |||| | Sbjct 217135 CTTTCGCACCTGCTCGACTTGTAGGTCTCACAGTCAAGCATCCTTATGCCATTACACTCT 217194 Query 121 CACTACGATTTCCGACCGTA 140 ||||||| || ||||| Sbjct 217195 ACGTACGATTACCATCCGTA 217214 >seq1447 Length=1029730 Score = 145 bits (160), Expect = 5e-33 Identities = 116/140 (83%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| | | |||||||||||||||| |||| Sbjct 759298 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATACGGAACCACCGGATCACTATGTCCTG 759239 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||||| |||||| | |||| | |||| || ||||||| ||| ||||||| |||| | Sbjct 759238 CTTTCGCACCTGCTCGACTTGTAGGTCTCACAGTCAAGCATCCTTATGCCATTACACTCT 759179 Query 121 CACTACGATTTCCGACCGTA 140 ||||||| || ||||| Sbjct 759178 ACGTACGATTACCATCCGTA 759159 >seq10921 Length=25804 Score = 132 bits (146), Expect = 3e-29 Identities = 115/140 (82%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| || | ||||||||||||||| ||| Sbjct 4652 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATATCCTA 4593 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| | ||| || | ||||| ||||||| |||||| | ||||||| |||||||| | Sbjct 4592 CTTTCGTACCTGTTCGACTTGTTTGTCTCGCAGTCAAGCTCCCTTTTGCTATTGCACTCA 4533 Query 120 TCACTACGATTTCCGACCGT 139 || | ||| || || | ||| Sbjct 4532 TCGC-ACGGTTACCAAGCGT 4514 >seq14174 Length=3265 Score = 100 bits (110), Expect = 2e-19 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| ||| |||||| |||| ||| |||||||||| |||| Sbjct 2334 TAACTTTTATCCGTTGAGCGACGGCACTTCCACTCATTGCCGTCGGATCACTAAGACCGT 2275 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||| |||||| |||||| ||||| || |||||| ||| |||| ||||||| Sbjct 2274 GTTTCCACCCTGCTCGAGTTGTCACTCTCACAGTCAAGCTTCCTTATGCCTTTGCACT 2217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351940600000