Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq11482 145 8e-33 >seq11482 Length=289922 Score = 145 bits (160), Expect = 8e-33 Identities = 146/185 (79%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTAC- 66 ||||||||||| ||| ||||| ||| ||||||||||||| | |||| ||| | || | Sbjct 12490 GGACTTTTACTGTGAGAAAATCGGAGTGTTCAAAGCAGGCTTATGCTTGAA--CGTTGCA 12547 Query 67 -CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125 ||||||||||| |||||||| || | |||||||| |||||||| | || || Sbjct 12548 GCATGGAATAATGGAATAGGATCA-CGATCTTATTTTGTTGGTTTCTAAGGTCGAGA-TA 12605 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| |||| ||||||| ||||| | | |||| |||||||| |||||||||||||||| Sbjct 12606 ATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGTGAAATTCTTGGA 12665 Query 186 TTTAT 190 ||||| Sbjct 12666 TTTAT 12670 Score = 87.8 bits (96), Expect = 2e-15 Identities = 133/183 (73%), Gaps = 5/183 (3%) Strand=Plus/Plus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATT 64 |||| || |||||||||| |||||||||| | | ||||||||| | || ||| ||| Sbjct 2897 CCAGAACGTTTACTTTGAGAAAATTAGAGTGCTAAAAGCAGGCTCTCGCCTATATATATT 2956 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGT 124 | |||||||||| |||| || | || || ||||| || ||||| ||| | | Sbjct 2957 GC-ATGGAATAATGAAATAAGATCT-CGATTTTATTTCGTTGGTTT-TAGAAATTGAGAT 3013 Query 125 AATGATAAATACGGAT-AGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 |||||| |||| |||| || ||||| || ||| | ||| | |||||||||||||| Sbjct 3014 AATGATTAATA-GGATCAGAGGGGGGCGTACGTACTGTGGTGTGAGAGGTGAAATTCTTG 3072 Query 184 GAT 186 ||| Sbjct 3073 GAT 3075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511910720000