Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq10921 300 2e-79 seq11737 297 3e-78 seq1447 297 3e-78 seq13487 271 1e-70 seq14174 268 1e-69 seq1 244 2e-62 seq11726 129 9e-28 >seq10921 Length=25804 Score = 300 bits (332), Expect = 2e-79 Identities = 231/274 (84%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| ||||||||| |||||| ||||||| ||| |||||||| | | | Sbjct 4987 GAGGTGGGTTTCACACTTAGATGCTTTCAGCGTTTATCCCGTCCCGACTTAGCTACTCTG 4928 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| ||||||| ||||| | | |||||| ||| ||||| |||||||||||||| Sbjct 4927 CCGTGCCCTTGGCAAGACAACAGATACACCAGCGGTCAGTCCAATTCGGTCCTCTCGTAC 4868 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 ||| ||| ||||||||| ||||||||||||| || |||||||||||||||||||| | Sbjct 4867 TAAAATCAGAGCCTCTCAAACTTCCTACGCCCACCACAGATAGGGACCGAACTGTCTCAC 4808 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| Sbjct 4807 GACGTTCTGAACCCAGCTCGCGTGCCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 4748 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| ||||||||||||||| Sbjct 4747 TTCTCCAGCCCCAGGATGTGACGAGCCGACATCG 4714 >seq11737 Length=277544 Score = 297 bits (328), Expect = 3e-78 Identities = 229/272 (84%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || ||| |||| |||| |||| ||||| ||||||| | ||| || ||||| | |||| Sbjct 216742 GGTGGGTTTCGCACTTATATGCTTTCAGTGCTTATCCTTGCCAGACGTAGCTACTCAGCG 216801 Query 64 ATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTA 123 ||||| |||| | ||||||| | |||||||||| |||||| | |||||||||||||||| Sbjct 216802 GTGCACCTGGCGGCACAACTGATACACCAGAGGTCTGTCCAACACGGTCCTCTCGTACTA 216861 Query 124 AGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGA 183 | ||| ||| |||||| ||| |||||| | ||||| |||||||||||||| ||| Sbjct 216862 GAGTCAGATCCACTCAAACTTCTCACGCCCGCTGTAGATAGAGACCGAACTGTCTCACGA 216921 Query 184 CGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTA 243 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 216922 CGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCTT 216981 Query 244 CTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || ||||||||||||| ||||||||||||||| Sbjct 216982 CTCCAGCCCCAGGATGTGACGAGCCGACATCG 217013 >seq1447 Length=1029730 Score = 297 bits (328), Expect = 3e-78 Identities = 229/272 (84%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || ||| |||| |||| |||| ||||| ||||||| | ||| || ||||| | |||| Sbjct 759631 GGTGGGTTTCGCACTTATATGCTTTCAGTGCTTATCCTTGCCAGACGTAGCTACTCAGCG 759572 Query 64 ATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTA 123 ||||| |||| | ||||||| | |||||||||| |||||| | |||||||||||||||| Sbjct 759571 GTGCACCTGGCGGCACAACTGATACACCAGAGGTCTGTCCAACACGGTCCTCTCGTACTA 759512 Query 124 AGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGA 183 | ||| ||| |||||| ||| |||||| | ||||| |||||||||||||| ||| Sbjct 759511 GAGTCAGATCCACTCAAACTTCTCACGCCCGCTGTAGATAGAGACCGAACTGTCTCACGA 759452 Query 184 CGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTA 243 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 759451 CGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCTT 759392 Query 244 CTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || ||||||||||||| ||||||||||||||| Sbjct 759391 CTCCAGCCCCAGGATGTGACGAGCCGACATCG 759360 >seq13487 Length=4875 Score = 271 bits (300), Expect = 1e-70 Identities = 216/260 (83%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| ||||| | |||||| ||| || |||| |||| Sbjct 3691 GCTTAGATGCTTTCAGCGTTTATCTCTTCCGTATTTAGCTACCCGGCAATGCCACTGGCG 3632 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||| ||| |||||||| | |||||| ||||||||||||||||| | ||||| || Sbjct 3631 TGACAACCGGTACACCAGAGATACGTCCATTCCGGTCCTCTCGTACTAGGAACAGCCCCC 3572 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 |||||||||| ||||||||| | |||||||||| ||||||||| ||||||| | ||||| Sbjct 3571 TTCAAATTTCCAACGCCCACGGCAGATAGGGACCAAACTGTCTCACGACGTTTTAAACCC 3512 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| ||||||||| ||||||||||| |||||||||||| || ||||||||| Sbjct 3511 AGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTACAGCCCCAG 3452 Query 256 GATGAGACGAGCCGACATCG 275 ||||||| |||||||||||| Sbjct 3451 GATGAGATGAGCCGACATCG 3432 >seq14174 Length=3265 Score = 268 bits (296), Expect = 1e-69 Identities = 225/275 (82%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||| |||||| |||||| ||| |||| ||| ||| | Sbjct 2670 GAGGTGGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCGCTCCGCACTTGGCTACCCTG 2611 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||||| | ||| ||| |||||| ||| || | |||||||||||||||| Sbjct 2610 CGTTTACCGTTGGCACGATAACAGGTACACCAGCGGTGCGTTCTTCCCGGTCCTCTCGTA 2551 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||||||| |||||||||| ||||||||| | |||||| ||||||||||||||| Sbjct 2550 CTAAGGAAGACTCCTCTCAATGCTCCTACGCCTGCACCGGATATGGACCGAACTGTCTCA 2491 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||| Sbjct 2490 CGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 2431 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | |||||||| || || |||||||||||| Sbjct 2430 GTACTACCGCCCCAGGTTGCGATGAGCCGACATCG 2396 >seq1 Length=2207822 Score = 244 bits (270), Expect = 2e-62 Identities = 210/260 (81%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| ||||| |||||||| | | || |||| |||||| Sbjct 519564 GCTTAGATGCTTTCAGCGGTTATCTCTTCCGCACTTAGCTACTCGGCAATGCCATTGGCA 519505 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||| | | |||||| ||| ||||| ||||||||||||||||| | ||| || Sbjct 519504 TGACAACCGATACACCAGCGGTGCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGGCTCT 519445 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| || | |||||||| |||||||||| ||||||||| ||||||| | ||||| Sbjct 519444 CTCAATCTTGCAGCGCCCACGGAAGATAGGGACCAAACTGTCTCACGACGTTTTAAACCC 519385 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| ||||||||| ||||||||||| |||||||||||| || ||||||||| Sbjct 519384 AGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTACAGCCCCAG 519325 Query 256 GATGAGACGAGCCGACATCG 275 ||||||| |||||||||||| Sbjct 519324 GATGAGATGAGCCGACATCG 519305 >seq11726 Length=335128 Score = 129 bits (142), Expect = 9e-28 Identities = 128/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || ||| |||| |||| |||| ||||| ||||||| | ||| || ||||| | |||| Sbjct 40454 GGTGGGTTTCGCACTTATATGCTTTCAGTGCTTATCCTTGCCAGACGTAGCTACTCAGCG 40395 Query 64 ATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTA 123 ||||| |||| | ||||||| | |||||||||| |||||| | |||||||||||||||| Sbjct 40394 GTGCACCTGGCGGCACAACTGATACACCAGAGGTCTGTCCAACACGGTCCTCTCGTACTA 40335 Query 124 AGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACC 169 | ||| ||| |||||| ||| |||||| | ||||| |||| Sbjct 40334 GAGTCAGATCCACTCAAACTTCTCACGCCCGCTGTAGATAGAGACC 40289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780663848000