Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq1 132 8e-29 seq1447 86.0 1e-14 >seq1 Length=2207822 Score = 132 bits (146), Expect = 8e-29 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 137 GCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGT 196 |||||||||| || || ||||| ||||||||||| |||||||||||||| ||| | | || Sbjct 1970638 GCTTCATGCGCTTCTTGCCGGCTTTTTGCTTCTCCAGCAGCTTGCGCTTGCGGGTGATGT 1970697 Query 197 CACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAA 256 | || ||||||||||| ||||| ||||| || | || ||||||| | || || | Sbjct 1970698 CGCCACCGTAGCATTTTGCCAGCACGTTTTTGCGCAGCGCCTTGATGTTCTCGCGGGCGA 1970757 Query 257 TGATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 294 |||| | | ||||||||||||||||| || |||||| Sbjct 1970758 TGATGTTGGCCCCAATGGCGGCCTGGATGGCCACGTCG 1970795 >seq1447 Length=1029730 Score = 86.0 bits (94), Expect = 1e-14 Identities = 137/193 (71%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 93 ACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCT-TCATGCGTTTTT 151 ||||| | ||||||||| | ||||||| || || || ||||| |||| |||| ||||||| Sbjct 247546 ACCGCCATGAAGGCTTCCT-GTGGAATCTCTACATTCCCCAC-CGCTCTCATACGTTTTT 247489 Query 152 TACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATT 211 | || || || || || || || || | ||| | | | ||| || ||||| |||| Sbjct 247488 TTCCTTTTTTCTGTTTTTCGAGTAGTTTTCTCTTTCTGGAAATGTCTCCTCCGTAACATT 247429 Query 212 TGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAA 271 ||||| ||||| |||| || || |||| || | || |||| | | | || | Sbjct 247428 TGGCCGTTACGTCTTTTCGAAGGGCTTTGATGGTTTCTCTGGCGATGAATTTCGCACCGA 247369 Query 272 TGGCGGCCTGGAT 284 ||||||||||||| Sbjct 247368 TGGCGGCCTGGAT 247356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838249088000