Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1 354 2e-95 seq11737 194 4e-47 seq1447 194 4e-47 seq10921 183 7e-44 >seq1 Length=2207822 Score = 354 bits (392), Expect = 2e-95 Identities = 327/411 (80%), Gaps = 10/411 (2%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||||||||||||||||||| ||||||||||||||| ||||| ||| || ||||| Sbjct 515020 TTTACAACCCGAAGGCCTTCTTCCCGCACGCGGCATGGCTGGATCAGACTTTCGTCCATT 514961 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 || ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 514960 GTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 514901 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 |||||||| ||||||||||||||||| ||||||||||| |||| || ||||||| ||| Sbjct 514900 GGCTGGTCGTCCTCTCAGACCAGCTACAGATCGTCGCCTTGGTGAGCTTTTACCCCACCA 514841 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT-G 243 ||||||||||| | | || ||| |||| |||||| | | |||||| |||| Sbjct 514840 ACTAGCTAATCTGACATCGGCCGCTCCAATAGCGAGAGGTCTTGCGATCCCCCCCTTTCA 514781 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 ||| | || |||||||||||| | |||| || |||||||| | | ||| Sbjct 514780 CCCTTAGGTCG-TATGCGGTATTAATCCGGCTTTCGCCGGGCTATCCCCCACTACTGGGC 514722 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | |||| | | |||||||||||| ||||||||||| || || | ||| | Sbjct 514721 ACGTTCCGATGCTTTACTCACCCGTTCGCCACTCGTC-GC-------CAGGTTGCCCCGC 514670 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 514669 GTTACCGTTCGACTTGCATGTGTAAGGCATGCCGCCAGCGTTCAATCTGAG 514619 Score = 354 bits (392), Expect = 2e-95 Identities = 327/411 (80%), Gaps = 10/411 (2%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||||||||||||||||||| ||||||||||||||| ||||| ||| || ||||| Sbjct 520605 TTTACAACCCGAAGGCCTTCTTCCCGCACGCGGCATGGCTGGATCAGACTTTCGTCCATT 520546 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 || ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 520545 GTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 520486 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 |||||||| ||||||||||||||||| ||||||||||| |||| || ||||||| ||| Sbjct 520485 GGCTGGTCGTCCTCTCAGACCAGCTACAGATCGTCGCCTTGGTGAGCTTTTACCCCACCA 520426 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT-G 243 ||||||||||| | | || ||| |||| |||||| | | |||||| |||| Sbjct 520425 ACTAGCTAATCTGACATCGGCCGCTCCAATAGCGAGAGGTCTTGCGATCCCCCCCTTTCA 520366 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 ||| | || |||||||||||| | |||| || |||||||| | | ||| Sbjct 520365 CCCTTAGGTCG-TATGCGGTATTAATCCGGCTTTCGCCGGGCTATCCCCCACTACTGGGC 520307 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | |||| | | |||||||||||| ||||||||||| || || | ||| | Sbjct 520306 ACGTTCCGATGCTTTACTCACCCGTTCGCCACTCGTC-GC-------CAGGTTGCCCCGC 520255 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 520254 GTTACCGTTCGACTTGCATGTGTAAGGCATGCCGCCAGCGTTCAATCTGAG 520204 >seq11737 Length=277544 Score = 194 bits (214), Expect = 4e-47 Identities = 159/192 (83%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGG-CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||| || ||| || ||||| | ||||||| ||||||| |||||||| | ||||| Sbjct 220973 TTTACAATCCATAGGACCGTCTTCCTCCACGCGGGATGGCTGGATCAGGCTCTCACCCAT 221032 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 221033 TGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTG 221092 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| | ||| |||||||| || ||| |||||| ||| |||| ||| ||||| | || Sbjct 221093 TGGGGGTTCACCCTCTCAGGCCCCCTAAAGATCGTAGCCATGGTGAGCCGTTACCTCACC 221152 Query 184 AACTAGCTAATC 195 | |||||||||| Sbjct 221153 ATCTAGCTAATC 221164 >seq1447 Length=1029730 Score = 194 bits (214), Expect = 4e-47 Identities = 159/192 (83%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGG-CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||| || ||| || ||||| | ||||||| ||||||| |||||||| | ||||| Sbjct 755400 TTTACAATCCATAGGACCGTCTTCCTCCACGCGGGATGGCTGGATCAGGCTCTCACCCAT 755341 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 755340 TGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTG 755281 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| | ||| |||||||| || ||| |||||| ||| |||| ||| ||||| | || Sbjct 755280 TGGGGGTTCACCCTCTCAGGCCCCCTAAAGATCGTAGCCATGGTGAGCCGTTACCTCACC 755221 Query 184 AACTAGCTAATC 195 | |||||||||| Sbjct 755220 ATCTAGCTAATC 755209 >seq10921 Length=25804 Score = 183 bits (202), Expect = 7e-44 Identities = 157/193 (81%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGG-CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||| || ||| || ||||| | ||||||||||||||| |||| |||| |||| Sbjct 754 TTTACAATCCAGAGGACCGTCTTCCTGCACGCGGCATGGCTGGGTCAGAGTTGCCTCCAT 695 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || |||||||||| ||||||||||||||||||||||||| |||| ||||||| |||||| Sbjct 694 TGCCCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGCCCGTATCTCAGTGCCAGTG 635 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| | | |||||||||| | ||| ||||||| |||| ||| ||| ||||| || Sbjct 634 TGGGGGATACTCCTCTCAGAGCCCCTAAGGATCGTAGCCTTGGTAAGCCGTTACCTTACC 575 Query 184 AACTAGCTAATCC 196 ||||||||||||| Sbjct 574 AACTAGCTAATCC 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222179968000