Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1 315 2e-83 seq11737 280 4e-73 seq1447 279 2e-72 seq10921 251 2e-64 >seq1 Length=2207822 Score = 315 bits (348), Expect = 2e-83 Identities = 279/354 (79%), Gaps = 26/354 (7%) Strand=Plus/Plus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| ||||||||||||||| ||||| ||| ||||||||||||||| ||||| | ||| Sbjct 514826 GTCAGATTAGCTAGTTGGTGGGGTAAAAGCTCACCAAGGCGACGATCTGTAGCTGGTCTG 514885 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| || | |||||| ||| |||||||||||| ||| |||||||||||||||||||| Sbjct 514886 AGAGGACGACCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAG 514945 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||| ||| ||||||| | |||| ||||| |||| | |||||||| | || ||||| Sbjct 514946 TGGGGAATTTTGGACAATGGACGAAAGTCTGATCCAGCCATGCCGCGTGCGGGAAGAAGG 515005 Query 343 CCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATA------------------------ 378 ||||||||| ||||| | || | ||| |||||| | Sbjct 515006 CCTTCGGGTTGTAAACCGCTTTTGTCAGGGAAGAAATCCTTTGAGCTAATACCTCGGGGG 515065 Query 379 -ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 |||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||| Sbjct 515066 GATGACGGTACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 515125 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 ||||| || ||||||| |||||||||| |||||||||| ||||| ||| |||| Sbjct 515126 TAGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGTT 515178 Score = 315 bits (348), Expect = 2e-83 Identities = 279/354 (79%), Gaps = 26/354 (7%) Strand=Plus/Plus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| ||||||||||||||| ||||| ||| ||||||||||||||| ||||| | ||| Sbjct 520411 GTCAGATTAGCTAGTTGGTGGGGTAAAAGCTCACCAAGGCGACGATCTGTAGCTGGTCTG 520470 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| || | |||||| ||| |||||||||||| ||| |||||||||||||||||||| Sbjct 520471 AGAGGACGACCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAG 520530 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||| ||| ||||||| | |||| ||||| |||| | |||||||| | || ||||| Sbjct 520531 TGGGGAATTTTGGACAATGGACGAAAGTCTGATCCAGCCATGCCGCGTGCGGGAAGAAGG 520590 Query 343 CCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATA------------------------ 378 ||||||||| ||||| | || | ||| |||||| | Sbjct 520591 CCTTCGGGTTGTAAACCGCTTTTGTCAGGGAAGAAATCCTTTGAGCTAATACCTCGGGGG 520650 Query 379 -ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 |||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||| Sbjct 520651 GATGACGGTACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 520710 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 ||||| || ||||||| |||||||||| |||||||||| ||||| ||| |||| Sbjct 520711 TAGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGTT 520763 >seq11737 Length=277544 Score = 280 bits (310), Expect = 4e-73 Identities = 364/501 (73%), Gaps = 24/501 (5%) Strand=Plus/Minus Query 21 AGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATAC 80 ||| ||||| ||||||| ||||||||| | ||||| || | | || | ||||| | | Sbjct 221309 AGACCGGCGCACGGGTGCGTAACGCGTATGCAACCTACCTTTTTCAAAGGGATAGCCCAT 221250 Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTC 140 |||| || |||||| |||||| || | | |||||| | | | |||| | Sbjct 221249 GGAAACGTGGATTAATACCTTATAATAGT-TTAGACCACATGGTTTAGATTTGAAAGATT 221191 Query 141 CGGCGGTACAG-GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAA 199 ||| | || ||| | | |||| |||||||||| |||| ||||||||||| |||| Sbjct 221190 TATCGG-AGAGAGATGGGCATGCGTAAGATTAGCTAGATGGTGAGGTAACGGCTCACCAT 221132 Query 200 GGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTC 259 ||| |||||| ||| | ||||||||||||| | ||||| ||| |||||||||||| | Sbjct 221131 GGCTACGATCTTTAGGGGGCCTGAGAGGGTGAACCCCCACACTGGTACTGAGACACGGAC 221072 Query 260 CAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAG 319 || |||||||||||||||||||||| ||||||||| |||||||| | |||||||| ||| Sbjct 221071 CAGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGACAATGGGTGAGAGCCTGATCCAG 221012 Query 320 CAACGCCGCGTGAGCGATGAAGG-CCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATA 378 | | ||||||| || || || ||| || | ||||| || | | ||||||| | Sbjct 221011 CCATCCCGCGTGGAGGAAGACGGTCCTATGGATTGTAAACTCCTTTTATATAGGAAGAAA 220952 Query 379 -------------------ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCC 419 |||||||||| | || |||| |||||||||| |||||| Sbjct 220951 CGCCAGTACGTGTACTGGTCTGACGGTACTATATGAATAAGCACCGGCTAACTCCGTGCC 220892 Query 420 AGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGT 479 |||||||||||||||||| |||| || ||||||||||||| ||| | ||| |||||||| Sbjct 220891 AGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCGGATTTA-TTGGGTTTAAAGGGT 220833 Query 480 GCGTAGGTGGTTTCTTAAGTC 500 ||||||||| | |||||| Sbjct 220832 CCGTAGGTGGGCTTGTAAGTC 220812 >seq1447 Length=1029730 Score = 279 bits (308), Expect = 2e-72 Identities = 365/503 (73%), Gaps = 28/503 (6%) Strand=Plus/Plus Query 21 AGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATAC 80 ||| ||||| ||||||| ||||||||| | ||||| || | | || | ||||| | | Sbjct 755064 AGACCGGCGCACGGGTGCGTAACGCGTATGCAACCTACCTTTTTCAAAGGGATAGCCCAT 755123 Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTAT--CGCATGGTAGAAGTATCAAAGC 138 |||| || |||||| |||||| |||| | |||||| | | | |||| Sbjct 755124 GGAAACGTGGATTAATACCTTATAATAG---TTTAGGCCACATGGTTTAGATTTGAAAGA 755180 Query 139 TCCGGCGGTACAG-GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACC 197 | ||| | || ||| | | |||| |||||||||| |||| ||||||||||| ||| Sbjct 755181 TTTATCGG-AGAGAGATGGGCATGCGTAAGATTAGCTAGATGGTGAGGTAACGGCTCACC 755239 Query 198 AAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGG 257 | ||| |||||| ||| | ||||||||||||| | ||||| ||| |||||||||||| Sbjct 755240 ATGGCTACGATCTTTAGGGGGCCTGAGAGGGTGAACCCCCACACTGGTACTGAGACACGG 755299 Query 258 TCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGC 317 ||| |||||||||||||||||||||| ||||||||| |||||||| | |||||||| | Sbjct 755300 ACCAGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGACAATGGGTGAGAGCCTGATCC 755359 Query 318 AGCAACGCCGCGTGAGCGATGAAGG-CCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA 376 ||| | ||||||| || || || ||| || | ||||| || | | ||||||| Sbjct 755360 AGCCATCCCGCGTGGAGGAAGACGGTCCTATGGATTGTAAACTCCTTTTATATAGGAAGA 755419 Query 377 TA-------------------ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTG 417 | |||||||||| | || |||| |||||||||| |||| Sbjct 755420 AACGCCAGTACGTGTACTGGTCTGACGGTACTATATGAATAAGCACCGGCTAACTCCGTG 755479 Query 418 CCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGG 477 |||||||||||||||||||| |||| || ||||||||||||| ||| | ||| |||||| Sbjct 755480 CCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCGGATTTA-TTGGGTTTAAAGG 755538 Query 478 GTGCGTAGGTGGTTTCTTAAGTC 500 || ||||||||| | |||||| Sbjct 755539 GTCCGTAGGTGGGCTTGTAAGTC 755561 >seq10921 Length=25804 Score = 251 bits (278), Expect = 2e-64 Identities = 273/362 (75%), Gaps = 25/362 (7%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||| |||||||||||||||||||||||||||||||||||| |||||| ||| | | Sbjct 557 GCGTAGGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCTACGATCCTTAGGGGCTC 616 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||| ||||| ||| ||||||| |||| ||| |||||||||||||||||| Sbjct 617 TGAGAGGAGTATCCCCCACACTGGCACTGAGATACGGGCCAGACTCCTACGGGAGGCAGC 676 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 ||| |||||||||| |||||| || |||| |||| | |||||||| || || Sbjct 677 AGTAGGGAATATTGGGCAATGGAGGCAACTCTGACCCAGCCATGCCGCGTGCAGGAAGAC 736 Query 341 GG-CCTTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGA-------------------TA 378 || ||| || | ||||| || | | || |||||| || Sbjct 737 GGTCCTCTGGATTGTAAACTGCTTT--TGAATGGGAAGAATGTGCGGCTTGCGAGCTGTA 794 Query 379 ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 438 |||||||||| || ||||| ||||||||||||||||||||||||||||||||||| Sbjct 795 ATGACGGTACCATTAGAATAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 854 Query 439 AGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAG 498 ||| ||| ||||||||||||| ||| | ||| ||||||||||||||| || || |||| Sbjct 855 AGGTGGCGAGCGTTATCCGGATTTA-TTGGGTTTAAAGGGTGCGTAGGCGGCTTAATAAG 913 Query 499 TC 500 || Sbjct 914 TC 915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497330432000