Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1 340 4e-91 seq11737 309 7e-82 seq1447 309 7e-82 seq10921 291 2e-76 >seq1 Length=2207822 Score = 340 bits (376), Expect = 4e-91 Identities = 289/354 (82%), Gaps = 4/354 (1%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||| || |||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 515074 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 515133 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 ||||||| |||||||||||||||||||| ||||| ||| |||| |||| ||||||| Sbjct 515134 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTATGTAAGACAGAGGT 515193 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAG--GA 178 |||| | ||||||||| || ||||| |||| |||||| ||| |||||| | || Sbjct 515194 GAAATCCCCGGGCTCAACCTGGGAACTGCCTTTGTGACTGCATAGCTTGAGTGCGGCAGA 515253 Query 179 GGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGT 238 |||| | ||||||||| ||||||| ||||||||||||||||| ||||||||||| | Sbjct 515254 GGGGGA--TGGAATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCGAT 515311 Query 239 GGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAAC 298 ||||||||| |||| | |||||| || | || |||||||||||||||||||| Sbjct 515312 GGCGAAGGCAATCCCCTGGGCCTGCACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 515371 Query 299 AGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGG 352 |||||||||||||||||||||||||||| ||||||||| ||| | ||| ||| Sbjct 515372 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCAACTGGTTGTTGGG 515425 Score = 340 bits (376), Expect = 4e-91 Identities = 289/354 (82%), Gaps = 4/354 (1%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||| || |||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 520659 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 520718 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 ||||||| |||||||||||||||||||| ||||| ||| |||| |||| ||||||| Sbjct 520719 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTATGTAAGACAGAGGT 520778 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAG--GA 178 |||| | ||||||||| || ||||| |||| |||||| ||| |||||| | || Sbjct 520779 GAAATCCCCGGGCTCAACCTGGGAACTGCCTTTGTGACTGCATAGCTTGAGTGCGGCAGA 520838 Query 179 GGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGT 238 |||| | ||||||||| ||||||| ||||||||||||||||| ||||||||||| | Sbjct 520839 GGGGGA--TGGAATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCGAT 520896 Query 239 GGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAAC 298 ||||||||| |||| | |||||| || | || |||||||||||||||||||| Sbjct 520897 GGCGAAGGCAATCCCCTGGGCCTGCACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 520956 Query 299 AGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGG 352 |||||||||||||||||||||||||||| ||||||||| ||| | ||| ||| Sbjct 520957 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCAACTGGTTGTTGGG 521010 >seq11737 Length=277544 Score = 309 bits (342), Expect = 7e-82 Identities = 308/397 (78%), Gaps = 8/397 (2%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||||| |||| || ||||||||||| Sbjct 220913 AAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCG 220854 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 || ||| |||| |||||||| ||||||||| | |||||||| |||||||| |||| | Sbjct 220853 GATTTATTGGGTTTAAAGGGTCCGTAGGTGGGCTTGTAAGTCAGTGGTGAAAGCCTATCG 220794 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 || ||| | ||||| |||| ||||| | || ||||| | | | | |||| Sbjct 220793 CTTAACGATAGAACTGCCATTGATACTGCTAGCCTTGAGTGAGTTTGAAGTAGCTAGAAT 220734 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 ||||||||||||||||||| ||||||||| ||| ||| | |||||||| | || Sbjct 220733 ATGTAGTGTAGCGGTGAAATGCATAGATATTACATAGAATACCGATTGCGAAGGCAGGTT 220674 Query 253 GCTG-GACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 || |||| |||||||||||| | |||||||||||||||| |||||||||||||||| Sbjct 220673 ACTAAGACTC-AACTGACACTGATGGACGAAAGCGTGGGGAGCGAACAGGATTAGATACC 220615 Query 312 CTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTG 371 ||||||||||||||||||||||||| ||||| | ||| || | | | | ||| Sbjct 220614 CTGGTAGTCCACGCCGTAAACGATGTATACTCGCTGTTGG------AATTTATTTCAGTG 220561 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | ||| || | |||||||| |||||||||||||| Sbjct 220560 GCTAAGCGAAAGTGATAAGTATACCACCTGGGGAGTA 220524 >seq1447 Length=1029730 Score = 309 bits (342), Expect = 7e-82 Identities = 308/397 (78%), Gaps = 8/397 (2%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||||| |||| || ||||||||||| Sbjct 755460 AAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCG 755519 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 || ||| |||| |||||||| ||||||||| | |||||||| |||||||| |||| | Sbjct 755520 GATTTATTGGGTTTAAAGGGTCCGTAGGTGGGCTTGTAAGTCAGTGGTGAAAGCCTATCG 755579 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 || ||| | ||||| |||| ||||| | || ||||| | | | | |||| Sbjct 755580 CTTAACGATAGAACTGCCATTGATACTGCTAGCCTTGAGTGAGTTTGAAGTAGCTAGAAT 755639 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 ||||||||||||||||||| ||||||||| ||| ||| | |||||||| | || Sbjct 755640 ATGTAGTGTAGCGGTGAAATGCATAGATATTACATAGAATACCGATTGCGAAGGCAGGTT 755699 Query 253 GCT-GGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 || |||| |||||||||||| | |||||||||||||||| |||||||||||||||| Sbjct 755700 ACTAAGACT-CAACTGACACTGATGGACGAAAGCGTGGGGAGCGAACAGGATTAGATACC 755758 Query 312 CTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTG 371 ||||||||||||||||||||||||| ||||| | ||| || | | | | ||| Sbjct 755759 CTGGTAGTCCACGCCGTAAACGATGTATACTCGCTGTTGG------AATTTATTTCAGTG 755812 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | ||| || | |||||||| |||||||||||||| Sbjct 755813 GCTAAGCGAAAGTGATAAGTATACCACCTGGGGAGTA 755849 >seq10921 Length=25804 Score = 291 bits (322), Expect = 2e-76 Identities = 307/398 (77%), Gaps = 7/398 (2%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 814 AAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCGAGCGTTATCCG 873 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 || ||| |||| ||||||||||||||| || || |||||| | ||| ||| | | Sbjct 874 GATTTATTGGGTTTAAAGGGTGCGTAGGCGGCTTAATAAGTCGGTGGTTAAAAGTAGCAG 933 Query 133 CTCAACCCCGGGAC-TGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191 || ||| || ||| | || |||| | ||| ||| | |||| | ||| Sbjct 934 CTTAACTGTTTTACATGCCATCGATACTGTTGAGCTTGAGATATTTGGAGGCAGCTAGAA 993 Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251 || | ||||||||||||||||| |||||| | ||||| ||| | |||||||| | | Sbjct 994 TTTCCGGTGTAGCGGTGAAATGCATAGATACCGGAAGGAATACCGATTGCGAAGGCAGGT 1053 Query 252 TGCT-GGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATAC 310 |||| || | ||||||| |||| || |||||||||||||| ||||||||||||||||| Sbjct 1054 TGCTACGAAT-AAACTGACGCTGATGCACGAAAGCGTGGGGATCAAACAGGATTAGATAC 1112 Query 311 CCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGT 370 ||||||||||||||||||||||||||| |||||| ||| ||| | ||| || | || Sbjct 1113 CCTGGTAGTCCACGCCGTAAACGATGATTACTAGTTGTTGGG--GTTTAA--GCCTCAGT 1168 Query 371 GCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | || || | ||||||| ||||||||||||||| Sbjct 1169 GACCAAGGGAAACCGATAAGTAATCCACCTGGGGAGTA 1206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202983424000