Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20]
18,000 sequences; 550,885,727 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq11482 320 3e-85
seq5180 96.9 7e-18
seq13199 84.2 4e-14
>seq11482
Length=289922
Score = 320 bits (354), Expect = 3e-85
Identities = 263/313 (84%), Gaps = 9/313 (3%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGC---TTCT 76
|| |||||||||||||| |||||||| | | | ||| || || | ||| ||||
Sbjct 13073 GAACGAGACCTTAACCTACTAAATAGTTACGT--GATTTT-CGAATCACGGGCAACTTCT 13129
Query 77 TAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135
|||||||||||| || | | || |||||||||||||||||||||||||||||||||||
Sbjct 13130 TAGAGGGACTATTGGTTTTTAACCAATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 13189
Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195
||||||||||||||||||||||||||||||||||| | || |||| | || ||||
Sbjct 13190 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAGGTCAGCGAGCTT-TC-CCTTC 13247
Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255
||||||||| |||||||||| | |||| |||||||||||||||| ||||||||||
Sbjct 13248 ACCGGAAGGTGCGGGTAATCTTTTGAAACCTCATCGTGCTGGGGATAGATCATTGCAATT 13307
Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315
|||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||
Sbjct 13308 ATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTC 13367
Query 316 CCTGCCCTTTGTA 328
|||||||||||||
Sbjct 13368 CCTGCCCTTTGTA 13380
Score = 138 bits (152), Expect = 2e-30
Identities = 167/219 (76%), Gaps = 9/219 (4%)
Strand=Plus/Plus
Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT-GACA 172
||||||||||||||||||||||||||||||| | ||| |||||||||||||||| || |
Sbjct 3580 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGAGGCTGCACGCGCGCTACACTGGAGA 3639
Query 173 GAGCCAACGAGTTCAT-CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG 231
| | | ||| | | ||| | | |||| ||||||| | || | |||| |||
Sbjct 3640 GTTCAGAATGTTTCTTCCTACTTCGACAGAAG---TGGGTAACCATGAAATTCTCT-TCG 3695
Query 232 TG-CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC-G 289
|| ||||| |||| ||||||||||| | |||||||||||| |||||||||| |
Sbjct 3696 TGACTGGGATCGGAGC-TTGCAATTATTCTCCGTCAACGAGGAATTCCTAGTAAGCACTA 3754
Query 290 TGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||||||| | | | |||||| ||||||| ||||||||
Sbjct 3755 TTTCATCAGAATGTGCTGATTATGTCCCTGTCCTTTGTA 3793
>seq5180
Length=100460
Score = 96.9 bits (106), Expect = 7e-18
Identities = 84/101 (83%), Gaps = 4/101 (4%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGCTC--AAGCCGATGGAAGTTTGAG-GCAATAACAGGTCTG 128
|||||||||| || | |||||| |||||| || | |||| |||||||||||||||
Sbjct 66526 CTTCTTAGAGAGATTGACGGCTCTGAAGCCGTACGA-GAATGAGAGCAATAACAGGTCTG 66468
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169
||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 66467 TGATGCCCTCAGATGCCCTGGGCCGCACGCGCGCTACAATG 66427
Score = 87.8 bits (96), Expect = 3e-15
Identities = 82/101 (81%), Gaps = 4/101 (4%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGCTC--AAGCCGATGGAAGTTTGAG-GCAATAACAGGTCTG 128
|||||||||| || | |||||| ||| || || | |||| |||||||||||||||
Sbjct 64845 CTTCTTAGAGAGATTGACGGCTCTGAAGTCGTACGA-GAATGAGAGCAATAACAGGTCTG 64787
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169
||||| ||| |||||| |||||||||||||||||||| ||
Sbjct 64786 TGATGTCCTCAGATGTCATGGGCCGCACGCGCGCTACAATG 64746
>seq13199
Length=6010
Score = 84.2 bits (92), Expect = 4e-14
Identities = 82/101 (81%), Gaps = 6/101 (6%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGCTC--AAGCCGATGGAAGTTTGAG-GCAATAACAGGTCTG 128
|||||||||| || | |||||| |||||| | ||| |||| |||||||||||||||
Sbjct 5964 CTTCTTAGAGAGATTGACGGCTCTGAAGCCG-TACAAGAATGAGAGCAATAACAGGTCTG 5906
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169
||||||| ||||| |||||||||||||||||||| ||
Sbjct 5905 --ATGCCCTCAGATGCCTTGGGCCGCACGCGCGCTACAATG 5867
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947029504000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |