Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq11482 320 3e-85 seq5180 96.9 7e-18 seq13199 84.2 4e-14 >seq11482 Length=289922 Score = 320 bits (354), Expect = 3e-85 Identities = 263/313 (84%), Gaps = 9/313 (3%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGC---TTCT 76 || |||||||||||||| |||||||| | | | ||| || || | ||| |||| Sbjct 13073 GAACGAGACCTTAACCTACTAAATAGTTACGT--GATTTT-CGAATCACGGGCAACTTCT 13129 Query 77 TAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 |||||||||||| || | | || ||||||||||||||||||||||||||||||||||| Sbjct 13130 TAGAGGGACTATTGGTTTTTAACCAATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 13189 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | || |||| | || |||| Sbjct 13190 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAGGTCAGCGAGCTT-TC-CCTTC 13247 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 ||||||||| |||||||||| | |||| |||||||||||||||| |||||||||| Sbjct 13248 ACCGGAAGGTGCGGGTAATCTTTTGAAACCTCATCGTGCTGGGGATAGATCATTGCAATT 13307 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 |||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| Sbjct 13308 ATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTC 13367 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 13368 CCTGCCCTTTGTA 13380 Score = 138 bits (152), Expect = 2e-30 Identities = 167/219 (76%), Gaps = 9/219 (4%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT-GACA 172 ||||||||||||||||||||||||||||||| | ||| |||||||||||||||| || | Sbjct 3580 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGAGGCTGCACGCGCGCTACACTGGAGA 3639 Query 173 GAGCCAACGAGTTCAT-CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 | | | ||| | | ||| | | |||| ||||||| | || | |||| ||| Sbjct 3640 GTTCAGAATGTTTCTTCCTACTTCGACAGAAG---TGGGTAACCATGAAATTCTCT-TCG 3695 Query 232 TG-CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC-G 289 || ||||| |||| ||||||||||| | |||||||||||| |||||||||| | Sbjct 3696 TGACTGGGATCGGAGC-TTGCAATTATTCTCCGTCAACGAGGAATTCCTAGTAAGCACTA 3754 Query 290 TGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||| | | | |||||| ||||||| |||||||| Sbjct 3755 TTTCATCAGAATGTGCTGATTATGTCCCTGTCCTTTGTA 3793 >seq5180 Length=100460 Score = 96.9 bits (106), Expect = 7e-18 Identities = 84/101 (83%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTC--AAGCCGATGGAAGTTTGAG-GCAATAACAGGTCTG 128 |||||||||| || | |||||| |||||| || | |||| ||||||||||||||| Sbjct 66526 CTTCTTAGAGAGATTGACGGCTCTGAAGCCGTACGA-GAATGAGAGCAATAACAGGTCTG 66468 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 ||||||||| ||||| ||||||||||||||||||||| || Sbjct 66467 TGATGCCCTCAGATGCCCTGGGCCGCACGCGCGCTACAATG 66427 Score = 87.8 bits (96), Expect = 3e-15 Identities = 82/101 (81%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTC--AAGCCGATGGAAGTTTGAG-GCAATAACAGGTCTG 128 |||||||||| || | |||||| ||| || || | |||| ||||||||||||||| Sbjct 64845 CTTCTTAGAGAGATTGACGGCTCTGAAGTCGTACGA-GAATGAGAGCAATAACAGGTCTG 64787 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 ||||| ||| |||||| |||||||||||||||||||| || Sbjct 64786 TGATGTCCTCAGATGTCATGGGCCGCACGCGCGCTACAATG 64746 >seq13199 Length=6010 Score = 84.2 bits (92), Expect = 4e-14 Identities = 82/101 (81%), Gaps = 6/101 (6%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTC--AAGCCGATGGAAGTTTGAG-GCAATAACAGGTCTG 128 |||||||||| || | |||||| |||||| | ||| |||| ||||||||||||||| Sbjct 5964 CTTCTTAGAGAGATTGACGGCTCTGAAGCCG-TACAAGAATGAGAGCAATAACAGGTCTG 5906 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 ||||||| ||||| |||||||||||||||||||| || Sbjct 5905 --ATGCCCTCAGATGCCTTGGGCCGCACGCGCGCTACAATG 5867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947029504000