Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1 536 4e-150 seq13487 480 3e-133 seq11737 398 3e-108 seq1447 398 3e-108 seq10921 365 2e-98 seq14174 242 1e-61 >seq1 Length=2207822 Score = 536 bits (594), Expect = 4e-150 Identities = 423/498 (85%), Gaps = 13/498 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||||||| |||||| | |||||||||||||||||||||||||| |||||||| |||| Sbjct 517456 CGAGTCCGAATAGGGCGTCTAGTCGCTGGGTGTAGACCCGAAACCAGGTGATCTATCCAT 517515 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||| Sbjct 517516 GGCCAGGATGAAGGTGCGGTAACACGCACTGGAGGTCCGAACCGACTAGTGTTGCAAAAC 517575 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||| ||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| Sbjct 517576 TAGCGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACCTGGAGATAGCTGGTTCTC 517635 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 517636 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATTACCATCGGGGGTAGAGCACTGTTATGG 517695 Query 241 CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTACC 300 |||||||||||| ||||||||||||||||||||||||||||||| | || || ||| Sbjct 517696 CTAGGGGGTCATGGCGACTTACCAAACCATTGCAAACTCCGAATACCGATGAG---TACA 517752 Query 301 GC--GGGAGTGAGGGCA-TGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 || ||||| || ||| ||||||||| ||||| | | ||||| || || || ||| Sbjct 517753 GCTTGGGAGACAGAGCACCGGGTGCTAACGTCCGGACTCAAGAGGGAAACAACCCAGACC 517812 Query 358 ATCAGCTAAGG-CCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 ||||||||| |||| |||| ||||||| | |||||||| || ||||| || Sbjct 517813 GCCAGCTAAGGTCCCCAAAAT--TGGCTAAGTGGGA--AACGAAGTGGGAAGGCTAAAAC 517868 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 || ||||||||||||| |||||||||| |||||||||| |||||| |||||||| | Sbjct 517869 AGTCAGGATGTTGGCTTAGAAGCAGCCA-CCATTTAAAGAAAGCGTAATAGCTCACTGAT 517927 Query 477 CGAGGAGTCGGGCGTGGA 494 |||| ||| ||| ||| Sbjct 517928 CGAGTCGTCCTGCGCGGA 517945 >seq13487 Length=4875 Score = 480 bits (532), Expect = 3e-133 Identities = 408/495 (82%), Gaps = 7/495 (1%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||||||| |||||| | |||||||||||||||||||||||||| ||||||| |||| Sbjct 1537 CGAGTCCGAATAGGGCGTCTAGTCGCTGGGTGTAGACCCGAAACCAGATGATCTATCCAT 1596 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||| ||||||| |||||||| ||||||| ||||||||||||| |||||||| | Sbjct 1597 GGCCAGGTTGAAGGTTGGGTAACACCAACTGGAGGACCGAACCCACTAACGTTGAAAAGT 1656 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 1657 TAGGGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAATCTGGAAATAGCTGGTTCTC 1716 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 ||||||||||||||||||||||||| ||| |||| | ||||||||||||||||||||| Sbjct 1717 CCCGAAAACTATTTAGGTAGTGCCTCGAGTCTCACTACAGGGGGTAGAGCACTGTTATGG 1776 Query 241 CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTACC 300 |||||||||||| ||||||||||||||||| ||||||||||||| | | ||| | | Sbjct 1777 CTAGGGGGTCATCGCGACTTACCAAACCATGGCAAACTCCGAATACCTGTAAGTGCAATC 1836 Query 301 GCGGGAGTGAGGGCAT-GGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTAT 359 |||||| | | ||| ||||||||| ||||| | ||||| || || || ||| Sbjct 1837 TCGGGAGACA-GACATCGGGTGCTAACGTCCGGTGTCAAGAGGGAAACAACCCAGACCGC 1895 Query 360 CAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419 ||||||||| ||| ||| | ||||||| || |||||||| || ||||| |||| Sbjct 1896 CAGCTAAGGTCCC-TAATATCTGCTAAGTGGAA--AACGAAGTGGGAAGGCTAAAACAGT 1952 Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGA 479 |||| |||||||| |||||||||| | |||||||| |||||| |||||||| |||| Sbjct 1953 CAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTGATCGA 2011 Query 480 GGAGTCGGGCGTGGA 494 | ||| ||| ||| Sbjct 2012 GTCGTCCTGCGCGGA 2026 >seq11737 Length=277544 Score = 398 bits (440), Expect = 3e-108 Identities = 413/531 (78%), Gaps = 9/531 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACA--GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| ||||||| | || |||| ||||| ||||||| |||||||||||| Sbjct 218779 CGAGTCTGAATAGGGCGAAATAGTTAGTGGGATTAGACGCGAAACCGTGTGATCTACCCA 218720 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 ||| |||| ||||| || |||||||| | |||||| ||||||| | | |||||||| Sbjct 218719 TGGGCAGGTTGAAGCTGTGGTAACACACAGTGGAGGACCGAACCAGTTGACGTTGAAAAG 218660 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||| ||||||||||||||||||||| || |||||| |||||||||| || || Sbjct 218659 TCTTTGGATGACCTGTGGGTAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTCGTACT 218600 Query 180 CTCCGAAAACTATTTAGGTAGTGC-CTCAAGTATCACCATCGGG-GGTAGAGC-ACTGTT 236 | |||||| |||||||| || |||| ||| | | | |||||||| |||| | Sbjct 218599 CCCCGAAATGCATTTAGGTGCAGCGCTCAGGTAGAGTCTTATAGAGGTAGAGCTACTGAT 218540 Query 237 ATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTT 296 ||| | |||| | | | | |||||| | | |||||||||||||| || || | Sbjct 218539 -TGGATGCGGGGGCTTCACCGCCTACCAATTCCTGACAAACTCCGAATGCT-ATAAGATA 218482 Query 297 TACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 ||| | || ||||||||| ||||||||||||||| | |||||||| ||||| || ||| Sbjct 218481 TACTG-GGCAGTGAGGGCTTGGGTGCTAAGGTCCAAGTCCGAGAGGGAAAGAACCCAGAC 218423 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 ||||||||||| ||| ||||| |||||||| || |||| || |||||| ||| Sbjct 218422 CATCAGCTAAGGTCCCCAAATGTATGCTAAGTTGAAAAAACGCGGTTGGATTGCATTGAC 218363 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 218362 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTGGT 218303 Query 477 CGAG-GAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGC 526 |||| | | ||||| | |||||||| |||| || |||| ||||||||| Sbjct 218302 CGAGCGGGGCGGGCATCGATAATAAGCGGGCATAAAGTATAGTACCGAAGC 218252 >seq1447 Length=1029730 Score = 398 bits (440), Expect = 3e-108 Identities = 413/531 (78%), Gaps = 9/531 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACA--GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| ||||||| | || |||| ||||| ||||||| |||||||||||| Sbjct 757594 CGAGTCTGAATAGGGCGAAATAGTTAGTGGGATTAGACGCGAAACCGTGTGATCTACCCA 757653 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 ||| |||| ||||| || |||||||| | |||||| ||||||| | | |||||||| Sbjct 757654 TGGGCAGGTTGAAGCTGTGGTAACACACAGTGGAGGACCGAACCAGTTGACGTTGAAAAG 757713 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||| ||||||||||||||||||||| || |||||| |||||||||| || || Sbjct 757714 TCTTTGGATGACCTGTGGGTAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTCGTACT 757773 Query 180 CTCCGAAAACTATTTAGGTAGTGC-CTCAAGTATCACCATCGGG-GGTAGAGC-ACTGTT 236 | |||||| |||||||| || |||| ||| | | | |||||||| |||| | Sbjct 757774 CCCCGAAATGCATTTAGGTGCAGCGCTCAGGTAGAGTCTTATAGAGGTAGAGCTACTGAT 757833 Query 237 ATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTT 296 ||| | |||| | | | | |||||| | | |||||||||||||| || || | Sbjct 757834 -TGGATGCGGGGGCTTCACCGCCTACCAATTCCTGACAAACTCCGAATGCT-ATAAGATA 757891 Query 297 TACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 ||| | || ||||||||| ||||||||||||||| | |||||||| ||||| || ||| Sbjct 757892 TACTG-GGCAGTGAGGGCTTGGGTGCTAAGGTCCAAGTCCGAGAGGGAAAGAACCCAGAC 757950 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 ||||||||||| ||| ||||| |||||||| || |||| || |||||| ||| Sbjct 757951 CATCAGCTAAGGTCCCCAAATGTATGCTAAGTTGAAAAAACGCGGTTGGATTGCATTGAC 758010 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 758011 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTGGT 758070 Query 477 CGAG-GAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGC 526 |||| | | ||||| | |||||||| |||| || |||| ||||||||| Sbjct 758071 CGAGCGGGGCGGGCATCGATAATAAGCGGGCATAAAGTATAGTACCGAAGC 758121 >seq10921 Length=25804 Score = 365 bits (404), Expect = 2e-98 Identities = 409/535 (76%), Gaps = 19/535 (4%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACA-GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| | || ||| ||||||| ||||||| |||||||||||||| Sbjct 2951 CGAGTCTGAATAGGGCGTTAAGTTTGTGGCTGTAGACGCGAAACCTAGTGATCTACCCAT 3010 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||||| ||||| || ||||||| ||| ||| | |||||||| | Sbjct 3011 GGTCAGGTTGAAGGTTGGGTAAGACCAACTGGAGGACCGTACCGGTATACGTTGAAAAGT 3070 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 |||||| |||||||||||||||||||||||| |||||| |||||||||| || ||| Sbjct 3071 GTTCGGATGAACTGTGGGTAGGGGTGAAAGGCTAATCAAACTGGGAAATAGCTCGTACTC 3130 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCA------AGTATCACCATCGGGGGTAGAGC-ACT 233 |||||| |||||||||| || || ||| | | | | |||||||| ||| Sbjct 3131 CCCGAAATGTATTTAGGTACAGCGTCGGCGTTGAGTCTTATC----GAGGTAGAGCTACT 3186 Query 234 GTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAG 293 | | ||| | |||| | | | ||||||| ||||||||||||||| || || Sbjct 3187 GAT-TGGATGCGGGGGAGTCACATCCTACCAAATTCAGACAAACTCCGAATGCG-ATAAG 3244 Query 294 TTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCC- 352 | || | ||| ||||||||| ||||||||||||||| | |||||||| ||||| || Sbjct 3245 ATATAGC-CGGCAGTGAGGGCTCGGGTGCTAAGGTCCGGGTCCGAGAGGGAAAGAACCCA 3303 Query 353 GGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTA 412 | |||| ||||||||| | | |||| ||||||| ||| || ||||||||| ||| Sbjct 3304 GAACTA-CAGCTAAGGTCTCCAAATCTATACTAAGTTGAACAAAGGAAGTCTGACTGCCG 3362 Query 413 AGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCAC 472 ||||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||| Sbjct 3363 AGACAGCCAGGATGTTTGCTTGGAAGCAG-CAATCATTTAAAGAGTGCGTAACAGCTCAC 3421 Query 473 TAGTCGAG-GAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGC 526 | |||||| | | ||||| | |||||||| |||| || |||| ||||||||| Sbjct 3422 TGGTCGAGCGGGGCGGGCATCGATAATAAGCGGGCATAAAGTATAGTACCGAAGC 3476 >seq14174 Length=3265 Score = 242 bits (268), Expect = 1e-61 Identities = 399/565 (71%), Gaps = 18/565 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| ||| ||||||| | || || | |||||||||| || |||||||| ||||| Sbjct 570 CGAGTCTGAATAGGGCGATAATCAGTGTTTATAGACCCGAACCCCGGTGATCTAACCATG 629 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | |||||| |||||||||||||| || |||||||||||| Sbjct 630 TCCAGGATGAAGCTTGAGTAACATTAAGTGGAGGTCCGAACCGACCGATGTTGAAAAATC 689 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 | ||||||| ||||| ||||||||||| || || | ||| ||| |||||||||||| Sbjct 690 GGCGGATGAGGTGTGGTTAGGGGTGAAATGCCAATCGAACCGGGAGCTAGCTGGTTCTCC 749 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATC-GGGGGTAGAGCACTGTTATGG 240 |||||| | || ||| || || || | || ||||||| ||||||| | | | Sbjct 750 CCGAAATGTGTTGAGGCGCAGCGGTAACGATTATAGTCTGGGGGTAAAGCACTGAT-TCG 808 Query 241 CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC- 299 | ||| | | | ||||||| | ||||||| |||| | ||| | || Sbjct 809 GTGCGGGCTGCGAGAGCGGTACCAAATCGAGTCAAACTCTGAAT----ACCAGATGGACA 864 Query 300 CG-CGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTA 358 || | |||||| || | | |||| ||| | | ||||| || | || ||| | Sbjct 865 CGTTGCCAGTGAGACGGTGAGGGATAAGCTCCATCGTCAAGAGGGAAACAGCCCAGACCA 924 Query 359 TCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAG 418 ||||||||| ||| |||| ||| || ||| | | || || || || ||| |||||| Sbjct 925 CCAGCTAAGGTCCCCAAATCACACCTCAGTGATA--AAGGAGGTGGGAGTGCAAAGACAA 982 Query 419 CTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCG 478 | |||| ||| || | |||||||||| || || ||||||||||||| |||||||| ||| Sbjct 983 CCAGGAGGTTTGCCTAGAAGCAGCCA-TCCTTAAAAGAGTGCGTAATAGCTCACTGGTCA 1041 Query 479 AGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATT 538 || || ||| || ||| | |||| |||| ||| ||||||||| ||||||| || Sbjct 1042 AGCGCTCCTGCGCCGAAAATGAACGGG-GCTAAGGTGTGTACCGAAGCTGTGGGAT-ATG 1099 Query 539 TATAT-----GATCGGTAGGGGAGC 558 | ||| |||||||||||||| Sbjct 1100 TCTATCGATATATCGGTAGGGGAGC 1124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689295872000