Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq13487 288 2e-75 seq1 288 2e-75 seq11737 183 6e-44 seq1447 183 6e-44 seq10921 147 4e-33 seq14174 118 2e-24 >seq13487 Length=4875 Score = 288 bits (318), Expect = 2e-75 Identities = 259/323 (80%), Gaps = 7/323 (2%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||||||||||||||||||||| | | |||||||||||||||| ||||| ||||| | Sbjct 920 AGTGCACATGGTGGATGCCTTGGCAGTCATAGGCGATGAAGGACGTGGTAGCCTGCGAAA 979 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||||||| ||||||| |||||||||| |||| ||||||||||||||||| | Sbjct 980 AGCTACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGATGTCCGAATGGGGAAACCCACC 1039 Query 121 CCTTT-GGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAA 179 | ||| ||| || ||| ||||||||||| | ||| | |||||| || ||||||||| Sbjct 1040 CTTTTAGGGGTATCGCACAGTGAATACATAGCTGTGCGAGGCGAACCTGGAGAACTGAAA 1099 Query 180 CATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAA 239 |||||||||| | ||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 1100 CATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCGAGAGTAGTGGCGAGCGAAA 1159 Query 240 TGGGATGAGCCTTTACGAGATAG---TTGAATTGATAGTGGAATCCTCTGGAAATAGGAG 296 | |||| ||||| ||||| ||| |||| || | | || ||| |||| | Sbjct 1160 TTGGATCAGCCTGTACGATTTAGCATTTGACTTAACA---AAACGGTCTTGAAAGTCCGG 1216 Query 297 CCATAGCGGGTGATAGCCCCGTA 319 |||||| ||||||||||||||| Sbjct 1217 CCATAGAAGGTGATAGCCCCGTA 1239 >seq1 Length=2207822 Score = 288 bits (318), Expect = 2e-75 Identities = 256/319 (80%), Gaps = 1/319 (0%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||| |||||||||||||||||||||||||||| ||||||||| |||| ||||||| Sbjct 516844 AGTGCATGTGGTGGATGCCTTGGCGATTACAGGCGACGAAGGACGTGATAGCCTGCGATA 516903 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||||||| ||||| |||||||||| |||||||||||||||||||||| | Sbjct 516904 AGCTTCGGGGAGCTGGCAAATTAGCTTTGATCCGGAGATTTCCGAATGGGGAAACCCA-C 516962 Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180 |||| ||| || ||| ||||||||||||| ||| | |||||| || |||||||||| Sbjct 516963 CCTTAGGGGTATCGCAATCTGAATACATAGGGTTGCGAGGCGAACCGGGTGAACTGAAAC 517022 Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240 |||| ||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 517023 ATCTCAGTAGCTCGAGGAAAAGACATCAACCGAGATTCCGAAAGTAGTGGCGAGCGAAAT 517082 Query 241 GGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCAT 300 ||| ||||| | | ||| | | || ||| |||||||| |||| Sbjct 517083 CGGAGAAGCCTGTGCTCTTTAGCATTACTCTTATCAGAACGGTCTGGAAAGTCCGGCCAC 517142 Query 301 AGCGGGTGATAGCCCCGTA 319 ||||||||||||||||||| Sbjct 517143 AGCGGGTGATAGCCCCGTA 517161 >seq11737 Length=277544 Score = 183 bits (202), Expect = 6e-44 Identities = 231/312 (74%), Gaps = 13/312 (4%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 |||| |||||||| ||| | | |||||| ||| ||||| ||| ||||| |||||||| Sbjct 219371 ATGGCGGATGCCTAGGCTCTCAGAGGCGACGAAAGACGTGGTAAGCTGCGAAAAGCTGCG 219312 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||| || ||| |||| |||||||||||| || |||||||| |||||||| ||| Sbjct 219311 GGGATTG-GCACACACGAAGTGATCCGCAGATGTCTGAATGGGGCAACCCGGCTGGTTGA 219253 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAG 187 | || | | || | | || || ||| | | ||||||||||||||||| Sbjct 219252 ---AGACCAGTC---ACACCTTCGGGTGG---GCAAACCCAGGGAACTGAAACATCTAAG 219202 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 || ||| ||||||||||||||| |||||||| ||||||||||||||||| ||| || Sbjct 219201 TACCTGGAGGAAAAGAAATCAATAGAGATTCCGTGAGTAGTGGCGAGCGAAAGCGGAGGA 219142 Query 248 GCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGT 307 ||| ||| || ||||||| |||||| |||| ||||||| | | ||| || |||| Sbjct 219141 GCCCTTA--AGCCAGTTGAA-TGATAGCCGAATGTACTGGAAAGTGCAACCAAAGGGGGT 219085 Query 308 GATAGCCCCGTA 319 ||||| || ||| Sbjct 219084 GATAGTCCTGTA 219073 >seq1447 Length=1029730 Score = 183 bits (202), Expect = 6e-44 Identities = 231/312 (74%), Gaps = 13/312 (4%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 |||| |||||||| ||| | | |||||| ||| ||||| ||| ||||| |||||||| Sbjct 757002 ATGGCGGATGCCTAGGCTCTCAGAGGCGACGAAAGACGTGGTAAGCTGCGAAAAGCTGCG 757061 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||| || ||| |||| |||||||||||| || |||||||| |||||||| ||| Sbjct 757062 GGGATTG-GCACACACGAAGTGATCCGCAGATGTCTGAATGGGGCAACCCGGCTGGTTGA 757120 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAG 187 | || | | || | | || || ||| | | ||||||||||||||||| Sbjct 757121 ---AGACCAGTC---ACACCTTCGGGTGG---GCAAACCCAGGGAACTGAAACATCTAAG 757171 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 || ||| ||||||||||||||| |||||||| ||||||||||||||||| ||| || Sbjct 757172 TACCTGGAGGAAAAGAAATCAATAGAGATTCCGTGAGTAGTGGCGAGCGAAAGCGGAGGA 757231 Query 248 GCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGT 307 ||| ||| || ||||||| |||||| |||| ||||||| | | ||| || |||| Sbjct 757232 GCCCTTA--AGCCAGTTGAA-TGATAGCCGAATGTACTGGAAAGTGCAACCAAAGGGGGT 757288 Query 308 GATAGCCCCGTA 319 ||||| || ||| Sbjct 757289 GATAGTCCTGTA 757300 >seq10921 Length=25804 Score = 147 bits (162), Expect = 4e-33 Identities = 183/246 (74%), Gaps = 15/246 (6%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 || |||||||| || | | |||||| ||||||||| || ||||||||||| |||| Sbjct 2309 GGGGGATGCCTAGGGTCTCAGAGGCGAAGAAGGACGTGATAAGCTGCGATAAGCTACGGG 2368 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 ||| ||||| ||| | || ||||| |||||||||||||||| |||| | || | Sbjct 2369 GAG-GAGCACACATCCATTAATCCGTAGATTTCCGAATGGGGCAACC---CAATTAG--- 2421 Query 130 CATTGCATGCTGA--ATACAT---AGGTATGCAAAGCGAACGCGGCGAACTGAAACATCT 184 ||| | || | || ||| || ||| || ||||||| || |||||||||||||| Sbjct 2422 --TTGAAGACTAATTATTCATGCAAGACATG-AAGGCGAACGTGGGGAACTGAAACATCT 2478 Query 185 AAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 ||||| | |||| || ||| |||| | |||||| | |||||||||||||||||| ||| Sbjct 2479 AAGTACCCATAGGAGAATAAAACAACAGTGATTCCGAGAGTAGTGGCGAGCGAAATCGGA 2538 Query 245 TGAGCC 250 |||| Sbjct 2539 GCAGCC 2544 >seq14174 Length=3265 Score = 118 bits (130), Expect = 2e-24 Identities = 127/166 (77%), Gaps = 9/166 (5%) Strand=Plus/Plus Query 87 TTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATAC 146 |||||||| | ||||||||||||| ||||| | || | || | ||||||| Sbjct 13 TTGATCCGGGGGTTTCCGAATGGGGCAACCC-------TAAGT-ACGGCTAGTTGAATAC 64 Query 147 ATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAA 205 |||| ||| ||||||||| |||||||||||||||| |||||||| |||| |||||| Sbjct 65 ATAGACTAGCACGAGCGAACGCAGCGAACTGAAACATCTTAGTAGCTGTAGGAGAAGAAA 124 Query 206 TCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 || | ||||||| ||||| |||||||||| ||||| |||||| Sbjct 125 GAAAACTCGATTCCCGTAGTAGCGGCGAGCGAAGTGGGAAGAGCCT 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918234688000