Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq11737 266 7e-69 seq1447 262 8e-68 seq10921 221 3e-55 seq1 210 5e-52 >seq11737 Length=277544 Score = 266 bits (294), Expect = 7e-69 Identities = 274/357 (77%), Gaps = 1/357 (0%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| |||||||||||| |||| || | |||||| Sbjct 220885 GGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCATATAGTACCGTCAGACCAGTACACGT 220944 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| |||| |||||||| |||||||||||| ||| ||| || |||| ||||| Sbjct 220945 ACTGGCGTTTCTTCCTATATAAAAGGAGTTTACAATCCATAGGACCGTCTTCCTCCACGC 221004 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 ||||||| |||| ||||| |||||| ||||||||||||||||||||||||||||| Sbjct 221005 GGGATGGCTGGATCAGGCTCTCACCCATTGTCCAATATTCCTCACTGCTGCCTCCCGTAG 221064 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| |||||||| | |||||||| |||||| || Sbjct 221065 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGTTCACCCTCTCAGGCCCCCTAAAGAT 221124 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||||| | |||| ||||||||| | || ||| ||||| |||||| |||||| | Sbjct 221125 CGTAGCCATGGTGAGCCGTTACCTCACCATCTAGCTAATCTTACGCATGCCCATCTCTCT 221184 Query 301 CCGATGAATCTTTAATGATGATACCATGCAATCTCATCATACCATCAGGTATTAATC 357 ||||| ||||||| | | |||||| ||| | | || || ||||||||||| Sbjct 221185 CCGATAAATCTTTCAAATCTAAACCATGTGGTCTAAAC-TATTATAAGGTATTAATC 221240 >seq1447 Length=1029730 Score = 262 bits (290), Expect = 8e-68 Identities = 246/313 (79%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| |||||||||||| |||| || | |||||| Sbjct 755488 GGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCATATAGTACCGTCAGACCAGTACACGT 755429 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| |||| |||||||| |||||||||||| ||| ||| || |||| ||||| Sbjct 755428 ACTGGCGTTTCTTCCTATATAAAAGGAGTTTACAATCCATAGGACCGTCTTCCTCCACGC 755369 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 ||||||| |||| ||||| |||||| ||||||||||||||||||||||||||||| Sbjct 755368 GGGATGGCTGGATCAGGCTCTCACCCATTGTCCAATATTCCTCACTGCTGCCTCCCGTAG 755309 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| |||||||| | |||||||| |||||| || Sbjct 755308 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGTTCACCCTCTCAGGCCCCCTAAAGAT 755249 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||||| | |||| ||||||||| | || ||| ||||| |||||| |||||| | Sbjct 755248 CGTAGCCATGGTGAGCCGTTACCTCACCATCTAGCTAATCTTACGCATGCCCATCTCTCT 755189 Query 301 CCGATGAATCTTT 313 ||||| ||||||| Sbjct 755188 CCGATAAATCTTT 755176 >seq10921 Length=25804 Score = 221 bits (244), Expect = 3e-55 Identities = 271/363 (75%), Gaps = 13/363 (4%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACA----AGCTCCCAC 56 ||||||||||||| ||||||||| |||||||| | ||||| || ||||| || Sbjct 842 GGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCTAATGGTACCGTCATTACAGCTCGCAA 783 Query 57 ACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTC 116 | | || ||||| | ||||| |||||||||||| || ||| || |||| | Sbjct 782 GCCGCACA----TTCTTCCCATTCAAAAGCAGTTTACAATCCAGAGGACCGTCTTCCTGC 727 Query 117 ACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCC 176 |||| | ||||||| ||||| | | ||||||| |||||||||| ||||||||||||| Sbjct 726 ACGCGGCATGGCTGGGTCAGAGTTGCCTCCATTGCCCAATATTCCCTACTGCTGCCTCCC 667 Query 177 GTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTAT 236 |||||||| ||| |||| ||||||| ||| ||||||||| |||||||||| |||||| Sbjct 666 GTAGGAGTCTGGCCCGTATCTCAGTGCCAGTGTGGGGGATACTCCTCTCAGAGCCCCTAA 607 Query 237 CCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCG 296 ||||||| || ||| ||||||||| || |||| ||||| |||||| |||||| Sbjct 606 GGATCGTAGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATCCTACGCATGCCCATC- 548 Query 297 TACA-CCGATGAATCTTT-AATGATGATACCATGCAATCTCATCATACCATCAGGTATTA 354 |||| || || ||| ||| ||| || ||| |||| || || ||| || ||| ||| Sbjct 547 TACATCCTATAAATATTTCAATAAT-CTACGATGCCAT-AAATTATATTATGCGGTGTTA 490 Query 355 ATC 357 ||| Sbjct 489 ATC 487 >seq1 Length=2207822 Score = 210 bits (232), Expect = 5e-52 Identities = 221/289 (76%), Gaps = 15/289 (5%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| ||||||||| | |||||| || |||| | || Sbjct 515114 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGTACCGTCA---TCCCCC-CGA 515059 Query 61 GG----------AAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCA 110 || |||| ||| |||||| | ||||| |||||||| ||| || ||||| Sbjct 515058 GGTATTAGCTCAAAGGATTTCTTCCCTGACAAAAGCGGTTTACAACCCGAAGG-CCTTCT 515000 Query 111 TCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTG 170 ||| ||||| | ||||||| ||||||| |||||||||| |||| ||||| |||||||| Sbjct 514999 TCCCGCACGCGGCATGGCTGGATCAGACTTTCGTCCATTGTCCAAAATTCCCCACTGCTG 514940 Query 171 CCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAAC 230 |||||||||||||| ||| |||||||||||| ||| ||||| | | |||||||||| | Sbjct 514939 CCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACC 514880 Query 231 CCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| ||||| | || |||| || ||||||| || |||| ||||| Sbjct 514879 AGCTACAGATCGTCGCCTTGGTGAGCTTTTACCCCACCAACTAGCTAAT 514831 Score = 210 bits (232), Expect = 5e-52 Identities = 221/289 (76%), Gaps = 15/289 (5%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| ||||||||| | |||||| || |||| | || Sbjct 520699 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGTACCGTCA---TCCCCC-CGA 520644 Query 61 GG----------AAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCA 110 || |||| ||| |||||| | ||||| |||||||| ||| || ||||| Sbjct 520643 GGTATTAGCTCAAAGGATTTCTTCCCTGACAAAAGCGGTTTACAACCCGAAGG-CCTTCT 520585 Query 111 TCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTG 170 ||| ||||| | ||||||| ||||||| |||||||||| |||| ||||| |||||||| Sbjct 520584 TCCCGCACGCGGCATGGCTGGATCAGACTTTCGTCCATTGTCCAAAATTCCCCACTGCTG 520525 Query 171 CCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAAC 230 |||||||||||||| ||| |||||||||||| ||| ||||| | | |||||||||| | Sbjct 520524 CCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACC 520465 Query 231 CCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| ||||| | || |||| || ||||||| || |||| ||||| Sbjct 520464 AGCTACAGATCGTCGCCTTGGTGAGCTTTTACCCCACCAACTAGCTAAT 520416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068607616000