Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq11482 650 0.0 seq9398 176 1e-41 seq5535 152 2e-34 seq11671 114 4e-23 seq10212 80.6 8e-13 >seq11482 Length=289922 Score = 650 bits (720), Expect = 0.0 Identities = 453/509 (89%), Gaps = 7/509 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||||||||| || ||| || ||||| ||||| |||||||||||| Sbjct 12269 GTACTCATTCCAATTACAAGACCTAATAGATCC-TGTATTGTTATTTTTTGTCACTACCT 12211 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 12210 CCCTGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAAGTGGTAGCCATT 12151 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| Sbjct 12150 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTGTAACCATGGTA 12091 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| || | ||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 12090 AGCCAATACCTTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCATCGACGGCA 12031 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG---GGCGTT 297 | | ||||| ||||||| ||||||||||||||||||||| | || | | || || Sbjct 12030 CGAAGCCATTCGATTCGCCAAGTTATTATGAATCACCAAGTATCCGGGTTGCCCCGCATT 11971 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCT 356 |||| | |||||||||||||| ||||||| ||||||||| |||| ||||||||||||| Sbjct 11970 GGTTCTGTATCTAATAAATACTACCCTTCCAGAAGTCGGGTATTTTCGCATGTATTAGCT 11911 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 |||||||||| ||||||||||| ||||| ||||| |||||||||||| |||||||||||| Sbjct 11910 CTAGAATTACTACGGTTATCCAAGTAGT-AGGTATTATCAAATAAACTATAACTGATTTA 11852 Query 417 ATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAAT 475 ||||||||||||||||||||| ||||| | ||| |||||||||||||||||||||||||| Sbjct 11851 ATGAGCCATTCGCAGTTTCACAGTATAAAGTTGTTTATACTTAGACATGCATGGCTTAAT 11792 Query 476 CTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||| Sbjct 11791 CTTTGAGACAAGCATATGACTACTGGCAG 11763 Score = 224 bits (248), Expect = 3e-56 Identities = 334/462 (72%), Gaps = 25/462 (5%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||||||| ||| | | || |||||||||||||||||||||||||||| Sbjct 2638 TATTTCTCTTCACTACCTCCTCGTTTTGAGAGTGGGTAATTTGCGCGCCTGCTGCCTTCC 2579 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||| ||||| |||||||||||||| ||||||| ||| | |||||| |||| | || | Sbjct 2578 TTGGAAGTGGTCGCCGTTTCTCAGGCGGCCTCTCCAGAACCAAACCCTGATTCTCTGT-A 2520 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 | |||| |||| ||||| | || |||| || |||||||||| | |||| | ||| Sbjct 2519 CTCGTTACAACCACGGTAGACATATAATGTACCGTCTAAAGTTGATAAGTCAGACACTTG 2460 Query 223 AATGAACCATCGCCGGCTCA-AGGCCATGCGATT--CGTTAAGTTATTATGAATCACCAA 279 || || ||| || | | ||| ||| |||| | |||||||| || ||||||| Sbjct 2459 AAAGATATGTCGTCGACACGGAGGTCATACGATCAACACAAAGTTATTTAGAGTCACCAA 2400 Query 280 GGAGCC---CCG---AAGGGCGTTG--GTTTTTTATCTAATAAATACACCCCTTCCGAAG 331 | | ||| |||| | | | |||| |||||||||| || |||||| Sbjct 2399 CAAACAGTTCCGGTGAAGGAACTAGAAGGTTTTGATCTAATAAAAGCA----TTCCGATA 2344 Query 332 TCG-----GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTAT-CCATGTAGTA 385 | | || || | |||||||||||| | | || || ||||||| |||| ||| | Sbjct 2343 TTGCTACCGGAATTGTCGCATGTATTAGCCCAGGCTTTTCCTCGGTTATTCCATTTAGGA 2284 Query 386 AGGTACTATCAAATAAACG-ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG 444 | || |||||| ||| ||| ||||| ||||||||| | ||||||||||| || | Sbjct 2283 -GTTATGATCAAAGAAAGTTATAGCTGATGTAATGAGCCGTACGCAGTTTCACCTTAAAC 2225 Query 445 ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486 | | ||||||||||||||||||||||||||| ||| || Sbjct 2224 CA-GTTCATACTTAGACATGCATGGCTTAATCTTCAAGATAA 2184 >seq9398 Length=56181 Score = 176 bits (194), Expect = 1e-41 Identities = 145/172 (84%), Gaps = 6/172 (3%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGAC-CCAAAAG-AGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||| ||| | | | ||| ||| ||| || | ||| ||||| | |||||||| Sbjct 31490 TACTCATTCCGATTGCGGGGCTCCAGAAGGAGCGCCCGCATCGTTATTTTTCGTCACTAC 31431 Query 59 CTCCCC---GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115 |||||| || |||||||||||||||||| |||||||||| ||||| || ||||||| Sbjct 31430 CTCCCCAGAGTTCTGGGATTGGGTAATTTGCGTGCCTGCTGCCGTCCTTAGACGTGGTAG 31371 Query 116 CCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 |||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 31370 CCGTTTCTCAGGCTGCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGT 31319 >seq5535 Length=92255 Score = 152 bits (168), Expect = 2e-34 Identities = 96/104 (92%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 ||| | |||||||||||||||||| |||||||||| ||||| || ||||||||||||||| Sbjct 23214 CGTTTTGGGATTGGGTAATTTGCGTGCCTGCTGCCGTCCTTAGACGTGGTAGCCGTTTCT 23273 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 |||||| |||||||||||||||||||| |||||||||||||||| Sbjct 23274 CAGGCTGCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGT 23317 Score = 118 bits (130), Expect = 3e-24 Identities = 129/167 (77%), Gaps = 7/167 (4%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA----GTAAGGTACTATCAAAT 399 ||||||||||||||| ||||||||||||||||||| ||| || ||| | | | | Sbjct 23554 GCATGTATTAGCTCTGGAATTACCACGGTTATCCAAGTATACCGTGAGGACGGACCCATT 23613 Query 400 AA-ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTT 457 || | |||||||||||||||| | ||| || || | || || | | | ||||| Sbjct 23614 TGGACCACGACTGATTTAATGAGCCGTCCGCGGTATCGCCGTGTAAACACGACTGTACTT 23673 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||| |||||| ||||||||||| |||||||||| Sbjct 23674 AGACATGCATGGCTTAGCCTTTGAAACAAGCATATG-CTACTGGCAG 23719 >seq11671 Length=279973 Score = 114 bits (126), Expect = 4e-23 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 92 TGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTA 151 ||||||| ||||| || ||||||||||||||||||||| |||||||||||||||||||| Sbjct 27369 TGCTGCCGTCCTTAGACGTGGTAGCCGTTTCTCAGGCTGCCTCTCCGGAATCGAACCCTG 27428 Query 152 ATTCCCCGTTACCCGT 167 |||||||||||||||| Sbjct 27429 ATTCCCCGTTACCCGT 27444 >seq10212 Length=38914 Score = 80.6 bits (88), Expect = 8e-13 Identities = 77/96 (80%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCA 466 |||||||||||||||| | ||| || || | || || | | | |||||||||||||| Sbjct 35985 ACTGATTTAATGAGCCGTCCGCGGTATCGCCGTGTAAACACGACTGTACTTAGACATGCA 35926 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGC 502 ||||||| |||||| ||||||||||| | |||||| Sbjct 35925 TGGCTTAGCCTTTGAAACAAGCATATG-CAACTGGC 35891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510128128000