Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq2224 138 3e-28 seq11737 104 6e-18 >seq2224 Length=1872321 Score = 138 bits (152), Expect = 3e-28 Identities = 216/308 (70%), Gaps = 12/308 (4%) Strand=Plus/Minus Query 38144 CAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACATCGCGAGCTACGCGCTGTTG 38203 |||||| || |||| ||||| || |||| || ||||| || ||||||||| || || Sbjct 1212240 CAGCGCAGCGCCGATATCTTTTTGGGCGTGCCCTTCAACATTGCCAGCTACGCGTTGCTG 1212181 Query 38204 ACGCATATGGTAGCCCAACAATGCGACTTGGATGTCGGTGAACTCATTTTCACCGGCGGC 38263 || || ||| | ||||| || ||||||||||| || ||||| |||| | || |||||| Sbjct 1212180 ACCCACATGCTGGCCCAGCAGTGCGACTTGGACGTGGGTGATTTCATCTGGACGGGCGGC 1212121 Query 38264 GACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCG 38323 ||| ||| | |||| ||||| | || |||| | || |||||| |||| | Sbjct 1212120 GACTGCCACCTCTACACCAATCACTTCGAGCAAGTGCAAACGCAGCTAGCGCG-----CA 1212066 Query 38324 CGCCCGCTGCCGAAGCTTGTGCTG------AAACGGAAGCCGCCGTCTATCTTTGACTAT 38377 ||||| |||| | | |||||| || || ||||| |||| ||||| ||||| Sbjct 1212065 CGCCCTTTGCC-TACCCGGTGCTGAACATCAAGCGCAAGCCCGCGTCCATCTTCGACTAC 1212007 Query 38378 GAATACGACGACTTTGAAATCGTCGGCTACGATCCGCATCCGGCGATTAAAGCACCGGTG 38437 || | ||| |||||||| | | | ||| | | ||| || | || || ||||||||| Sbjct 1212006 GAGTTCGAAGACTTTGAGGTGCTGGAGTACCAGCACCATGCGCCCATCAAGGCACCGGTG 1211947 Query 38438 GCGGTTTA 38445 ||||| || Sbjct 1211946 GCGGTGTA 1211939 >seq11737 Length=277544 Score = 104 bits (114), Expect = 6e-18 Identities = 287/439 (65%), Gaps = 6/439 (1%) Strand=Plus/Plus Query 37681 CATCTTAGAAAACGGCGTCGAAAAAGAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTT 37740 |||| | || || || ||||||| ||||||||| ||||| || || || | || Sbjct 158137 CATCCTTGAGAAAGGAAGCGAAAAAACAGACCGAACAGGCGTGGGAACCCTCAGTATTTT 158196 Query 37741 CGGCCGCCAGCTCCGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATT 37800 || | || | ||||| | | ||| || || ||||| || || || ||||||| Sbjct 158197 TGGACATCAAATGCGCTTTGATCTCTCAGAAGGCTTCCCGCTTGTTACCACCAAAAAATG 158256 Query 37801 GCATATCCGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCG 37860 ||| | | || || ||| ||||| | ||||||||||| || || || || || Sbjct 158257 CCATTTAAGATCGATTATTGTAGAACTTTTGTGGTTTTTAAAGGGTGAAACCAATATCGC 158316 Query 37861 CTATTTGCAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCT 37920 ||| | | || || |||| |||||||| || |||||||| ||||| || ||||| Sbjct 158317 TTATCTCAAAGAAAACAAGGTGAGCATTTGGGACGAATGGGCGGATGAAAATGGGGATCT 158376 Query 37921 CGGCCCGATTTACGGCGCGCAATGGCGCTCGTGG---AAGGGAGCAGACGGGAAAACCAT 37977 || || ||||||| || || ||| | ||| ||||| | ||||| || || Sbjct 158377 GGGTCCAGTTTACGGTGCCCAGTGGAGAAGTTGGCCAAAGGG---AAACGGGGAATTTAT 158433 Query 37978 CGACCAGATCGCATGGGTTGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGCTGCT 38037 ||||| |||| | | ||||| |||||| | ||||| |||| | | || | Sbjct 158434 TGACCAAATCGAGAAATTAATAGAAGACATCAAAAGCAATCCTGATTCTAGAAGACTCAT 158493 Query 38038 GGTGAGCGCTTGGAATGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGC 38097 || ||||||||||| || || | || | ||| ||| | || || || | | Sbjct 158494 TGTTTCGGCTTGGAATGTGGCGCAAATAGATCAAATGGCACTGGCTCCTTGCCACTGCTT 158553 Query 38098 CTTTCAGTTCTATGTCGCC 38116 |||||||| ||||| ||| Sbjct 158554 GTTTCAGTTTTATGTGGCC 158572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130612075700000