Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq15668 89.7 4e-13 seq1448 87.8 1e-12 >seq15668 Length=647317 Score = 89.7 bits (98), Expect = 4e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 66037 CTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCC 66096 ||||||| ||| | |||| ||| || || |||||||| || ||| |||||||| Sbjct 303421 CTCGTCAAGAGAAGAGTACTGGACGATCTCCGTGCACAGGTTTGAGCACTTGATGGTGCC 303480 Query 66097 CAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCC 66156 | || || || ||||||||||| ||||| || || ||||| | ||||||||| ||||| Sbjct 303481 GAGGTTTTGCTGGTTACTCTTGCGGTTGCAGGCGTCTTTGTAGAGCATGTACGGCGTGCC 303540 Query 66157 GGTCTCAACTTG 66168 ||||| || || Sbjct 303541 TGTCTCGACCTG 303552 >seq1448 Length=175156 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 61279 CAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCG 61338 || ||| | || || || || ||||||||||||||||| ||||||||||| ||||||| Sbjct 99566 CAGGTGCCTGAAGCTCGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACATCCACTCT 99507 Query 61339 GAGATGTACAGTGTTCTCATCGATACGTACATC 61371 ||||||||||| | || ||| | || |||||| Sbjct 99506 GAGATGTACAGCCTCCTGATCAACACCTACATC 99474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397480783520000