Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq1447 273 7e-69 seq2224 170 6e-38 >seq1447 Length=1029730 Score = 273 bits (302), Expect = 7e-69 Identities = 761/1159 (66%), Gaps = 29/1159 (3%) Strand=Plus/Plus Query 1777 GTTCCTTCAGGAGCATCAACTGGTGAACACGAAGCAGTAGAACTTCGTGATGGTGACAAA 1836 || ||||| ||||| |||||||| || ||||||||||| || || | ||||||| ||| Sbjct 702442 GTGCCTTCTGGAGCTTCAACTGGGGAGCACGAAGCAGTTGAGCTAAGAGATGGTGGTAAA 702501 Query 1837 GCTCGTTACGGTGGTCTTGG--TACTCAAAAAGCAGTTGATAACGTAAACAACGTTATTG 1894 | | || ||| || |||| |||||| || || || || | | || | Sbjct 702502 GAT---TATCTTGGAAAAGGAGTACT--AAAAGCTGTATCCAATGTCAATGAGATCATCG 702556 Query 1895 CTGAGCACATCATCGGATTCGACGTACGTGATCAACAAGGTATTGACCGCGCAATGATCG 1954 | || | | || ||| | || ||| ||| || ||||| | ||||| | Sbjct 702557 CAGATGAGCTTATTGGAATAACTGTTTTTGAGCAAGAACTCATTGATCAAATCATGATAG 702616 Query 1955 CTCTTGACGGTACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTTGGTGTGTCTA 2014 | || || || || || ||| || ||||| |||||||| ||| | |||||||| Sbjct 702617 AGTTAGATGGCACACCCAATAAATCAAAGCTTGGAGCCAACGCCATTTTGGGTGTGTCCC 702676 Query 2015 TCGCTGTAGCACGCGCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGCTACCTTGGCG 2074 | ||| ||| | || |||||| | | | | | || | || || || | || | Sbjct 702677 TTGCTTGTGCAAGGGCTGCTGCTAGCGAAATGGGCATGCCTTTGTATAGATATGTAGGTG 702736 Query 2075 GATTCAACACTAAAGTTCTTCCAACTCCAATGATGAACATCATCAACGGTGGTTCTCACT 2134 | | | | | ||||| ||||| ||| ||||||||||||||||| || || ||||| | Sbjct 702737 GGGTGAGCGCAAAAGTGCTTCCTGTTCCTATGATGAACATCATCAATGGGGGGTCTCATT 702796 Query 2135 CAGACGCTCCAATCGCTTTCCAAGAATTTATGATTGTACCTGCTGGTGCACCAACATTCA 2194 | || || ||||| || || ||||||||||||||| | || | | ||| | | || Sbjct 702797 CTGATGCGCCAATTGCCTTTCAAGAATTTATGATTATGCCCGTGGTTGCCAAATCCTTTT 702856 Query 2195 AAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAAC 2254 || | || ||| | ||||| || ||| | | |||||| | | || Sbjct 702857 CTGAGTCTCTAAAAATGGGAACCGAAATTTTTCACAAGTT----AAAATCGGTTTTGCAC 702912 Query 2255 GT----GGACTTGAAACAGCCGTAGGTGACGAAGGTGGTTTCGCACCTCGTTTCGACGGA 2310 | || ||| ||| ||||| || || |||||||| || || || | | ||| Sbjct 702913 GACAGAGGGCTTTCAACTGCCGTTGGGGATGAAGGTGGATTTGCTCCAACGCTAAAAGGA 702972 Query 2311 ACTGAAGATGGTGTTGAAACTATCATCAAAGCTATCGAAGCTGCTGGATATGTACCAGGT 2370 || ||||||| |||| |||||||| | ||||||| ||| || || | | || Sbjct 702973 ACAGAAGATGCACTTGAGACTATCATAGAGGCTATCGGTCTTGCGGGTTACAAAGCCGGA 703032 Query 2371 AAAGACGTATTTATCGGACTTGACTGTGCATCATCTGAATTCTACGATGCAGAACGTAAA 2430 |||| ||| | | | || |||||||| || |||| || || || ||| | ||| Sbjct 703033 GAAGAAGTAATGCTAGCTCTGGACTGTGCTTCTGCTGAGTTTTA---TGTAGATGGAAAA 703089 Query 2431 GTTTACGACTACACTAAATTTGAAGGTG---AAGGCGCTGCTGTTCGTACTGCTGCAGAA 2487 ||||| || || ||||||||||| | |||| || || | ||| | || | Sbjct 703090 ---TACGATTATACCAAATTTGAAGGAGCGCAAGG---TGAAATTAGAACTTCAGCCCAG 703143 Query 2488 CAAATCGACTACCTTGAAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGATGGT 2547 ||| || || | ||||| | | ||||| || || || | || |||||||| Sbjct 703144 CAAGCAGAATATTTGCAAGAACTCACCCAAAAATATCCCATTATTTCCATTGAAGATGGA 703203 Query 2548 ATGGACGAAAACGACTGGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTT 2607 |||||||||||||| ||||| |||||||||| ||||| ||| |||| | ||| Sbjct 703204 ATGGACGAAAACGATTGGGAGGGTTGGAAATTGCTTACAGAAAAGATTGGAAAAACGGTT 703263 Query 2608 CAATTGGTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCA 2667 ||| |||| || ||||| | || || || || || ||| || || |||| | Sbjct 703264 CAACTGGTGGGAGACGATCTTTTTGTTACCAATACCAAAAGGCTTATCAAGGGAATTGAA 703323 Query 2668 GAACACGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACT 2727 | || ||| || ||||| ||||||||||| |||||||| || || | ||||||| Sbjct 703324 AACAACATTGCCAATTCAATTCTTATCAAAGTAAACCAAATTGGAACGCTTTCTGAAACC 703383 Query 2728 TTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCA 2787 ||| || | ||||||| ||||||||||||||||| ||| | || ||| | || Sbjct 703384 ATTGCGGCGGTACAAATGGCCAAAGAAGCTGGATACACCTGTGTAATGTCTCACAGATCT 703443 Query 2788 GGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTA-ACGCTGGTCAAAT 2846 || ||||| |||||||| || || || ||| | || || || ||| | || ||||| Sbjct 703444 GGAGAAACAGAAGATTCTACCATTGCAGATTTGGCTGTAGC-GCTAGGAACAGGACAAAT 703502 Query 2847 TAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTAT 2906 ||| || ||||| || | | ||| | || || |||||||||||| ||||||| || Sbjct 703503 TAAAACTGGTTCTGCCTCTAGATCAGACAGAATGGCCAAATACAACCAACTGCTTCGAAT 703562 Query 2907 CGAAGACCAACTTGGTGAA 2925 |||| ||| | || ||| Sbjct 703563 TCAAGAGCAATTGGGCGAA 703581 >seq2224 Length=1872321 Score = 170 bits (188), Expect = 6e-38 Identities = 296/426 (69%), Gaps = 6/426 (1%) Strand=Plus/Minus Query 2516 ACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGA 2575 |||| ||||| ||| || | |||||||| || |||| |||| |||||||||||| |||| Sbjct 1235474 ACAAGTACCCCATCGTCTCCATCGAAGACGGCATGGCCGAAGGCGACTGGGACGGCTGGA 1235415 Query 2576 A-ATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTA 2634 | ||| | || || ||||| || || || || | || || |||||| ||||||| Sbjct 1235414 AGGTCT-TGACCGACCGTCTGGGCAAGAAGGTCCAGATCGTCGGCGACGACCTCTTCGTC 1235356 Query 2635 ACTAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATC 2694 || ||||| ||| | |||| |||| || | ||| ||||| ||||| ||| Sbjct 1235355 ACCAACACCAAGATCCTGAAGGAAGGCATTGACAAAGGCATTGCCAACTCCATCCTCATC 1235296 Query 2695 AAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAA 2754 || | ||||| ||||| || |||| || || || | ||| || || ||||| || Sbjct 1235295 AAGATCAACCAGATCGGCACCCTGACCGAGACCTTCGCCGCCATTGAGATGGCCAAGCGT 1235236 Query 2755 GCTGGATACACAGCAGTAGTATCA--CACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 || || ||||| || || |||| ||||| || || || || ||||| || || || | Sbjct 1235235 GCCGGCTACACCGCCGT--CATCAGCCACCGCTCGGGCGAGACGGAAGACTCCACGATTG 1235178 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 | || || || || | || || ||||| || ||||| ||||| |||| || | | Sbjct 1235177 CCGACATCGCTGTGGGCTTGAATGCAGGTCAGATCAAGACGGGTTCGCTGTCGCGCTCAG 1235118 Query 2873 ACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGAAGTTGCAG 2932 |||| || || || |||||||| ||||| || || ||||| | || || || || || | Sbjct 1235117 ACCGCATGGCCAAGTACAACCAGTTGCTGCGCATTGAAGAGGACCTGGGCGACGTGGCCG 1235058 Query 2933 AATACC 2938 |||| Sbjct 1235057 TCTACC 1235052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156005046792000