Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq1 122 1e-22 seq2224 116 6e-21 seq1447 93.3 7e-14 >seq1 Length=2207822 Score = 122 bits (134), Expect = 1e-22 Identities = 114/144 (79%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 3715 CCCGTCATCTAGAGGCCCAGGATACGACACTTTCACTGTCGGTACACGAGTTCGAATCTC 3774 ||| || |||||||||| |||| ||||| ||||||| || | ||| | ||||||||| | Sbjct 1738720 CCCTTCGTCTAGAGGCCTAGGACACGACCCTTTCACGGTTGTAACAGGGGTTCGAATCCC 1738661 Query 3775 GTCGGGAGAACCATTTAGGACTG-TAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAA 3833 | ||| ||| | ||| || |||||||| |||||||||||| ||||||||||| Sbjct 1738660 CTAGGGGACGCCACTGCGGAGTGGTAGTTCAGTTGGTTAGAATACCGGCCTGTCACGCCG 1738601 Query 3834 GTGGTCGCGGGTTCGATTCCCGTC 3857 | |||||||||||||| ||||||| Sbjct 1738600 GGGGTCGCGGGTTCGAGTCCCGTC 1738577 >seq2224 Length=1872321 Score = 116 bits (128), Expect = 6e-21 Identities = 211/309 (68%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 196783 TTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTC 196842 ||| ||||| || ||||| || || ||||| || | || || || |||||||| || Sbjct 1212253 TTGCCAGCTCTACCAGCGCAGCGCCGATATCTTTTTGGGCGTGCCCTTCAACATTGCCAG 1212194 Query 196843 TTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGTTCGT 196902 ||||| ||||||| |||||| |||| || ||| || ||| ||| || ||| | Sbjct 1212193 CTACGCGTTGCTGACCCACATGCTGGCCCAGCAGTGCGACTTGGACGTGGGTGATTTCAT 1212134 Query 196903 TTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACAGCT 196962 ||||| ||||| ||| |||| ||||| |||||||| | || || || || ||||| Sbjct 1212133 CTGGACGGGCGGCGACTGCCACCTCTACACCAATCACTTCGAGCAAGTGCAAACGCAGCT 1212074 Query 196963 GTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAGTATCTT 197022 | || | || || | ||| |||| ||||| ||||| || | ||||| Sbjct 1212073 AGCGCGCACGCCCTTTGCCTACCCGGTGCTGAACATCAAGCGCAAGCCCGCGTCCATCTT 1212014 Query 197023 CGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGATTAAAGC 197082 ||| ||| | ||||||||||| || || | | ||| | | ||| || | || || || Sbjct 1212013 CGACTACGAGTTCGAAGACTTTGAGGTGCTGGAGTACCAGCACCATGCGCCCATCAAGGC 1211954 Query 197083 CCCGGTGGC 197091 |||||||| Sbjct 1211953 ACCGGTGGC 1211945 >seq1447 Length=1029730 Score = 93.3 bits (102), Expect = 7e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 |||||||||||||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 1013787 GTAGTTCAGCTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGT 1013728 Query 3857 C 3857 | Sbjct 1013727 C 1013727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771368802960000