Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq11737 84.2 3e-11 seq1447 84.2 3e-11 seq2224 82.4 1e-10 >seq11737 Length=277544 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/75 (85%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 19330 CGGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGA 19387 ||||| ||||||||| | | |||||| ||||| ||||| ||||| ||| |||||||||| Sbjct 219576 CGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGA 219517 Query 19388 ATCCGATATTCTCCA 19402 |||||||||||||| Sbjct 219516 CTCCGATATTCTCCA 219502 >seq1447 Length=1029730 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/75 (85%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 19330 CGGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGA 19387 ||||| ||||||||| | | |||||| ||||| ||||| ||||| ||| |||||||||| Sbjct 756797 CGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGA 756856 Query 19388 ATCCGATATTCTCCA 19402 |||||||||||||| Sbjct 756857 CTCCGATATTCTCCA 756871 >seq2224 Length=1872321 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19528 ATTCCTCTATAGCTCAATCGGCAGAGCATCTGACTGTTAATCAGAGGGTTCCTGGTTCGA 19587 ||||||| |||||||| |||| ||||| | ||||||||||| | ||| |||||||||| Sbjct 1840754 ATTCCTCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 1840813 Query 19588 GTCCAGGTGGAGGAG 19602 | |||||| |||||| Sbjct 1840814 GCCCAGGTCGAGGAG 1840828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633937332000000