Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq9457 168 9e-37 seq1 127 3e-24 seq11737 95.1 2e-14 seq1447 95.1 2e-14 >seq9457 Length=55282 Score = 168 bits (186), Expect = 9e-37 Identities = 497/764 (65%), Gaps = 29/764 (4%) Strand=Plus/Plus Query 162096 AATGAAAGTAGCACTTATTACTGGGATCACAGGGCAAGATGGATCTTACCTAGCTGAACT 162155 ||||||| |||| | ||||| || | || || || |||||| | || | || ||| | Sbjct 33085 AATGAAAAAAGCATTAATTACAGGTGTAACCGGTCAGGATGGAGCCTATTTGGCAGAATT 33144 Query 162156 TCTCCTTCAGAAAGGATATACAGTTCACGGTATTATCCGTCGTGCTTCTATGATTAACAC 162215 ||| ||||| ||||| ||| ||||| ||||| | | | ||||| || | || || Sbjct 33145 TCTTCTTCAAAAAGGTTATGAGGTTCATGGTATAAAAAGAAGGGCTTCATTGTTCAATAC 33204 Query 162216 CCACAGAATTGACCATATCT---------TTGACCGCA------------TCACTCTCCA 162254 | || ||||||| || | | || || | ||| | || Sbjct 33205 CGACCGAATTGATCACCTTTACAAAGATCTTCACGAAACTAATGTAAAATTCAAATTACA 33264 Query 162255 TTATGGAGACCTTACCGATGCTTTGAGTATCGTATCTATTATTAAAACAGTTCAACCAGA 162314 |||||| ||| | | ||| | | |||| | ||||||| | ||| |||| || Sbjct 33265 TTATGGTGACTTGAGCGACTCCACCAATATCATTCGTATTATTCAGGAAGTAAAACCCGA 33324 Query 162315 TGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAGCCTGAATA 162374 || || |||||||| |||||| | ||||| || || ||||| | |||||||| Sbjct 33325 CGAGATTTATAACCTTGGGGCTATGTCGCACGTAAAAGTAAGTTTTGACGAACCTGAATA 33384 Query 162375 CACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGTCTTCTTGG 162434 || || | |||| | | || || ||||| | | ||||| || | || | || Sbjct 33385 TACCGCTAATGTGGACGGAATCGGTACATTAAGGATTTTGGAAGCTGTGAGGCTGTTGGG 33444 Query 162435 TATG---GAATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGT 162491 ||| ||| ||| || | || || ||||| ||| |||||| || || |||| Sbjct 33445 AATGACCGAAACAT--GTC-GCATTTATCAAGCCTCTACCTCTGAGCTATACGGCTTAGT 33501 Query 162492 TCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGC 162551 || ||| || ||| |||||||||||| | |||||| | || ||||||| ||| || Sbjct 33502 ACAAGAGGTGCCGCAGTCTGAAACCACTCCATTTTATCCAAGGTCTCCTTATGCAGTAGC 33561 Query 162552 TAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTC 162611 ||| ||||||| | |||||| | |||||| | ||| || |||| |||| | Sbjct 33562 CAAATTATATGGCTACTGGATTACAGTAAACTATCGCGAAGCTTACAACATGTATGCTTG 33621 Query 162612 TAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAA 162671 | || || |||||||| |||||| | ||||| || || ||||| ||||| || Sbjct 33622 CAATGGCATCCTATTCAACCACGAATCGCCTTTGAGAGGCGAAACCTTCGTGACACGTAA 33681 Query 162672 GATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAA-AGTGATCTACAACTTGGAA 162730 ||| | || | || | ||| | || | || | || ||| ||||||| Sbjct 33682 AATCACTAGGGCAGTTTCACAAATAGCCTTAGGTCAGGAAGAATG-TCTGTTTCTTGGAA 33740 Query 162731 ACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGA 162790 | ||| ||||| | | |||||||| || |||||||||||| | ||||| |||||||||| Sbjct 33741 ATCTCGATGCCAAAAGAGACTGGGGTCATGCCAAAGACTACATTGAGGCCATGTGGTTGA 33800 Query 162791 TGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGT 162834 | | || ||||| | | || |||||||| || || |||||| Sbjct 33801 TCTTGCAACAAGACGTGGCGGAAGATTATGTTATTGCTACTGGT 33844 >seq1 Length=2207822 Score = 127 bits (140), Expect = 3e-24 Identities = 332/495 (67%), Gaps = 20/495 (4%) Strand=Plus/Plus Query 162455 TCTACCAAGC---GAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAG 162511 |||||||||| || || ||| | || || || || ||||| ||||| || ||| || Sbjct 1991522 TCTACCAAGCTTCGA-CATCAG--AACTGTACGGACTTGTTCAAGAGACTCCGCAGCGAG 1991578 Query 162512 AAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGA 162571 |||| || || | || || || || || |||| ||||| || || ||||| | ||||| Sbjct 1991579 AAACTACACCTTTCTACCCCCGTTCTCCATATGCTGTTGCGAAGCTGTATGGCTACTGGA 1991638 Query 162572 TCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATC 162631 | | |||||||| ||| ||||| || | |||| | || || | || || | Sbjct 1991639 TTACTGTGAACTACAGAGAAGCCTATGGAATGTACGCCTGCAATGGCATCTTGTTTAACC 1991698 Query 162632 ACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCC 162691 ||||| | | | ||||||||||| || || |||||||| || || ||| | | Sbjct 1991699 ACGAATCCCCTATTCGGGGAGAGACGTTTGTAACTCGCAAGATTACACGGGCGTTGGCGC 1991758 Query 162692 GAAT-TAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGAC 162750 |||| || ||| || | || || || | | || || | |||| ||||| ||| Sbjct 1991759 GAATCAAGCTTGGCACCCAGAAATG-CCTGTATTTGGGTAATTTGGATGCGCGACGAGAC 1991817 Query 162751 TGGGGACACGCCAAAGACTACGT--AGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGC 162808 |||||||| ||||||||||| || ||| || | ||| | ||||| ||||| || || | Sbjct 1991818 TGGGGACATGCCAAAGACTATGTCGAGATGCAA--TGGCTAATGCTGCAGCAGGACAAAC 1991875 Query 162809 CAGATGATTATGTGATCGCAACTGGTGAGCAGTATTCTGTAAAGGACTTTGTTAA---TG 162865 |||| || | || || || ||||| ||||| ||| || ||||| || || Sbjct 1991876 CAGAGGACTTCGTAATTGCCACTGGCATTCAGTACAGTGTGCGCGATTTTGTGAACATTG 1991935 Query 162866 CTGCAGCACCATACTTTGGGT-TCAATATTGAATGGAGAGGTGAAGGTCTTGATGAGTTT 162924 |||| ||| |||| ||||| | | ||| |||| ||| || |||||||| Sbjct 1991936 CTGC-GCAGCATA---TGGGTCTGGACATTACGTGGACAGGCACTGGCGTTGATGAGCGG 1991991 Query 162925 GGATTCTGTCTCAAT 162939 ||||||| | |||| Sbjct 1991992 GGATTCTTGCCCAAT 1992006 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 516436 GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGATC 516495 Query 142853 CCGTTATTCTCCACCA 142868 |||| || |||||||| Sbjct 516496 CCGTCATCCTCCACCA 516511 >seq11737 Length=277544 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 142792 CGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGA 142850 ||||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 219576 CGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGA 219517 Query 142851 GTCCGTTATTCTCCACCAA 142869 |||| |||||||||| || Sbjct 219516 CTCCGATATTCTCCACGAA 219498 >seq1447 Length=1029730 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 142792 CGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGA 142850 ||||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 756797 CGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGA 756856 Query 142851 GTCCGTTATTCTCCACCAA 142869 |||| |||||||||| || Sbjct 756857 CTCCGATATTCTCCACGAA 756875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691303621680000