Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq8604 363 3e-98 seq139725 201 2e-49 >seq8604 Length=7606 Score = 363 bits (402), Expect = 3e-98 Identities = 266/305 (87%), Gaps = 3/305 (1%) Strand=Plus/Minus Query 15 GGGCCTTTCCTTCTGGGGATCCG-CATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT 73 ||||||| |||||||| || | | | || || ||| | | | | |||| |||||||| Sbjct 4133 GGGCCTTACCTTCTGGTGAGCTGTCGTGTTGTTTACTCAGCGCGGCAGGGAACCAGGACT 4074 Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||||||||||||||||||||||| ||||||||| || ||| ||||||||||||||||| Sbjct 4073 TTTACTTTGAAAAAATTAGAGTGTTTAAAGCAGGCATTCGCTTGAATACATTAGCATGGA 4014 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 ||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||| Sbjct 4013 ATAATAGAATAGGACTTT-GGTTCTATTTTGTTGGTTTCTAGGACCGAAGTAATGATTAA 3955 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||||||| ||||| | |||||| |||||||||||||||||||||||||||||| | Sbjct 3954 TAGGGATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAA 3895 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||||||||| |||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 3894 AGACTAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 3836 Query 314 AGGGG 318 ||||| Sbjct 3835 AGGGG 3831 >seq139725 Length=593 Score = 201 bits (222), Expect = 2e-49 Identities = 201/256 (79%), Gaps = 11/256 (4%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT------GCTCGAATACAT 124 || ||||||||||||||||||||||| ||||||||||| ||| || |||||| Sbjct 429 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCGTTTCCCATCGCCCGAATAATG 370 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA--CCGCC 182 | |||||||||||| ||||||||| | |||||||||||||||||| | | ||| ||| Sbjct 369 TTGCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTCT-TCGGAACCCGAG 312 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| || |||||| | ||||| | ||||||||||||||| Sbjct 311 GTAATGATTAAGAGGGACAGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTT 252 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 ||| ||||| ||||| |||||||| || ||||| |||||||||||||||| Sbjct 251 GGACCGTCGCAAGACGAACTAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-A 193 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||||| || Sbjct 192 GAACGAAAGTTAGAGG 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913914610752