Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq8604 414 4e-113 seq139880 109 2e-21 seq72705 78.8 4e-12 >seq8604 Length=7606 Score = 414 bits (458), Expect = 4e-113 Identities = 283/318 (89%), Gaps = 7/318 (2%) Strand=Plus/Minus Query 366 TCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGA 425 |||||||| ||||||| |||| |||||||| ||| || ||||||||| |||||||| Sbjct 1680 TCCGCGCT-----TAGGATGTTGGCTTAATGGTTTTAATCGACCCGTCTTGAAACACGGA 1626 Query 426 CCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGT 485 |||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||| Sbjct 1625 CCAAGGAGTCTAACATATATGCAAGTGTTTGGGTGGCAAACCCATGCGCGTAATGAAAGT 1566 Query 486 GAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGA 545 ||||| ||||| || || | |||||| |||||||||||| |||| | || |||| || Sbjct 1565 GAACGTAGGTGCGATCCGC--AAGGTGCAGCATCGACCGATCTTGATATTTTTGGATAGA 1508 Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 1507 TTTGAGTAAGAGCATATATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 1448 Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| Sbjct 1447 AAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAA 1388 Query 666 ATTTGGGTATAGGGGCGA 683 |||||||||||||||||| Sbjct 1387 ATTTGGGTATAGGGGCGA 1370 Score = 235 bits (260), Expect = 2e-59 Identities = 162/183 (89%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | ||||||||||||||||||||||||||| ||||||| |||||||||| ||||||| Sbjct 2175 TTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAG 2116 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||||||| |||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 2115 CTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 2056 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213 ||| ||||||||||||| || ||||||||||||||||||||| |||||| ||||| | Sbjct 2055 TTGAAAAGAGAGTTAAACAGTGCGTGAAATTGTTGAAAGGGAAACGCTTGACACCAGTCA 1996 Query 214 TGC 216 ||| Sbjct 1995 TGC 1993 >seq139880 Length=629 Score = 109 bits (120), Expect = 2e-21 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||| || |||| | | || | || |||||| | | |||| ||||||| Sbjct 382 GAGTCAGGTTGCTTGAGAGTGCAACCCAAAGTAGGTGGTAAACTCCACCTAAGGCTAAAT 323 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || | |||||||||||| ||||||| |||| ||||| || |||| |||||| | Sbjct 322 ACTGCCGTGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGAACTTTGAAG 263 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| ||||| |||||||| Sbjct 262 AGAGAGTTCAAAAGGACGTGAAA 240 >seq72705 Length=2132 Score = 78.8 bits (86), Expect = 4e-12 Identities = 99/135 (73%), Gaps = 12/135 (9%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 |||| | ||| || ||| | || |||||||||||||||||||||| | | ||| Sbjct 1064 GAGTCATAGCGTACACGTTTGTACTTGAAAGATGGTGAACTATGCCTGGGCAAGACAAAG 1005 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||| ||| || | |||| ||||| ||||||||||||| |||| | Sbjct 1004 CCAGAGGA------GGT-----CT-GTAGCGATTCTGACGTGCAAATCGATTGTCAGACC 957 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 956 TGGGTATAGGGGCGA 942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2076987368950