Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq8604 105 4e-21 seq139688 91.5 9e-17 >seq8604 Length=7606 Score = 105 bits (116), Expect = 4e-21 Identities = 82/91 (90%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 34 CCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTA 93 ||||| ||||||| |||||||||||||| || ||||||||| ||||||||||| ||||| Sbjct 3134 CCAAT-CCGAAAGC-CTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTA 3189 Query 94 CAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||||||||||||||| |||||| |||| Sbjct 3190 CAAAGGGCAGGGACGTAAT-CAACGCGAGCT 3219 >seq139688 Length=629 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 113 CTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 170 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 171 TAAT-CAACGCGAGCT 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300403933820