Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= AAMG01001467.1 Length=308 Score E Sequences producing significant alignments: (Bits) Value seq104303 197 2e-48 >seq104303 Length=211 Score = 197 bits (218), Expect = 2e-48 Identities = 145/167 (87%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 1 CGACCTGACCGTTACTGATCCTGAAGGTCTGAACTCCA--AAGGTTCCGACCAGCCAGTG 58 ||||||||| ||||||||||| ||||| |||||||||| || | | ||||||||| Sbjct 47 CGACCTGACGGTTACTGATCCAGAAGGCCTGAACTCCAGCAACAATGCT--CAGCCAGTG 104 Query 59 GTCAACGTGCACAACGACGTGCCGGTCATCACCGTTACCGCCAACACCCTTGAAGAGAAC 118 |||||| |||||||||| || ||||| |||||||||||||| |||||||| ||||| ||| Sbjct 105 GTCAACCTGCACAACGATGTTCCGGTTATCACCGTTACCGCTAACACCCTGGAAGAAAAC 164 Query 119 TCGGTCACTACAGGCACCGTCGCCGGTACCTTCGTTGCGACTGACGA 165 ||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 165 TCGGTCACTACGGGCACCGTCGCCGGTACCTTCGTTGCGAAAGACGA 211 Score = 78.8 bits (86), Expect = 2e-12 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 261 aaGCAGGTGCTGACTTCGTCAACGCCGGCAACCAGCTGCCGAAAATCG 308 ||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 1 AAGCAGGTGCTGACTTCGTCAACGCGGGCAACCAGCTGCCGAAGATCG 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 881959554432