Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq8604 149 7e-34 seq139725 87.8 2e-15 >seq8604 Length=7606 Score = 149 bits (164), Expect = 7e-34 Identities = 102/114 (89%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || | |||||||||||||||||||||||||||||||| Sbjct 3973 CTAGAAACCAACAAAATAGA-ACCAAAGTCCTATTCTATTATTCCATGCTAATGTATTCA 4031 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 ||| | ||||||||| |||||||||||||| |||| ||||||||||||||||| Sbjct 4032 AGCGAATGCCTGCTTTAAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCC 4085 >seq139725 Length=593 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/105 (79%), Gaps = 7/105 (7%) Strand=Plus/Plus Query 12 ACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGT- 70 ||||||||||||| || | ||||||||| |||||||||||| | |||||||||| Sbjct 326 ACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCAACATTATTCGGGCGAT 384 Query 71 -----AAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 | ||||||||||| |||||||||||| |||| ||||| || Sbjct 385 GGGAAACGCCTGCTTTGAGCACTCTAATTTTTTCAAAGTAAACGT 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594390171066