Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq8604 379 4e-103 seq139688 194 3e-47 >seq8604 Length=7606 Score = 379 bits (420), Expect = 4e-103 Identities = 271/310 (87%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||| ||||| | || | ||||| | |||||||| Sbjct 3497 GAACGAGACCTTAACCTGCTAAATAGTTAGGCCAACGTTTGTTGGTCGTCAACTTCTTAG 3438 Query 80 AGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||||| | || || | |||||||||||||||||||||||||||||||||||||| Sbjct 3437 AGGGACTATTGACTATTAGTCAATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 3378 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 |||||||||||||||||||||||||||||||| || ||||||||| | ||||||||| Sbjct 3377 AGATGTTCTGGGCCGCACGCGCGCTACACTGATCAAGTCAACGAGTTTACAACCTTGGCC 3318 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 ||||||||||||||||||| | ||||| ||||||||||||||| ||||||||||||| Sbjct 3317 GGAAGGTCTGGGTAATCTTTTGAAACTTGATCGTGCTGGGGATAGTCCATTGCAATTATT 3258 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 | |||||||||||||| ||||||||||| | ||||||||| |||||||||||||||||| Sbjct 3257 GGACTTCAACGAGGAATTCCTAGTAAGCGTGAGTCATCAGCTCGCGTTGATTACGTCCCT 3198 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 3197 GCCCTTTGTA 3188 >seq139688 Length=629 Score = 194 bits (214), Expect = 3e-47 Identities = 241/320 (75%), Gaps = 15/320 (5%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGG--CGGGTCGCCGGC---TT 74 || |||||| || ||| |||||||| | || ||||| | ||| ||||| || Sbjct 469 GAACGAGACTCTAGCCTACTAAATAGACCGGTG-GCTTTTAAACACGTCACCGGCCGCTT 411 Query 75 CTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||| |||| | ||||| ||| ||| |||||||||||||||||| Sbjct 410 CTTAGAGGGACAGGCGGCGGTTCAGCCGCACGAAACA-GAG-CAATAACAGGTCTGTGAT 353 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGC-CAACGAG---TTCAT 188 |||||||||||| | ||||||||||||||||||||||| || | || || | | | Sbjct 352 GCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGA-AGTGATCAGCGTGCATTGTGT 294 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||| | | | | | | |||||| | || || || ||||| | ||||||| | || Sbjct 293 GACCTGGTCGGCCACGACCGGGTAACCCAGTGAACCTTCTTCGTGATTGGGATAGGGGAT 234 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 || ||||||| | ||| |||||||||| || |||||||||| ||||| ||| |||||||| Sbjct 233 TGTAATTATTCCCCTTGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGA 174 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 173 TTACGTCCCTGCCCTTTGTA 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945869667072