Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq8604 320 5e-85 seq139829 136 1e-29 >seq8604 Length=7606 Score = 320 bits (354), Expect = 5e-85 Identities = 259/310 (84%), Gaps = 5/310 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 7300 CTTTTGTTCTACACGAGATTTCTGTTCTCGTTGAGTCCCCCTTAGGACACCTGCGTTATC 7359 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| Sbjct 7360 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTTAACCTAGATC 7419 Query 127 GGC-CCGCGAAG-GACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT 184 ||| || ||| ||||||| || |||| | || |||| || || | | ||| Sbjct 7420 GGCTGCGTAAAGCAACCTTAATGCTAGAAGAAGGAAAATGAATTCCGCCTCTACCTAATT 7479 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 | ||||||||||||| ||| |||||||||||| ||||| |||||||| ||||||||| Sbjct 7480 AAATAAGTAAAAAAACAATACGGGTAGTGGTATCTCACTGGCGCCGAA---GCTCCCACT 7536 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 |||||| |||| | | ||| |||||||| ||| ||||||||||||||||||||||||| Sbjct 7537 TATTCTGCACCCCATATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCT 7596 Query 305 TCTTTCCCCG 314 |||||||||| Sbjct 7597 TCTTTCCCCG 7606 Score = 248 bits (274), Expect = 3e-63 Identities = 139/140 (99%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 60 Query 464 TACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 120 Query 524 TGCGTCAACATCACTTTCTG 543 |||||||||| ||||||||| Sbjct 121 TGCGTCAACACCACTTTCTG 140 >seq139829 Length=321 Score = 136 bits (150), Expect = 1e-29 Identities = 116/142 (82%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 173 TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAA 232 |||| ||| | || | |||||| |||| || | |||||||||||||| ||| | Sbjct 181 TTCCACTTAACCGAGTCAGTAAAGAAACTATGAAAGTAGTGGTATTTCATCGGCGTCTTG 240 Query 233 ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 || ||||||||||| |||||||||||| ||| |||||| |||| |||||||||||||| Sbjct 241 -CGACTCCCACTTATGCTACACCTCTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGC 299 Query 293 TCAACAGGGTCTTCTTTCCCCG 314 |||||||||||||||||||||| Sbjct 300 TCAACAGGGTCTTCTTTCCCCG 321 Score = 89.7 bits (98), Expect = 2e-15 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 46 CCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 ||||||||||||||||||| ||| |||||||| ||||||||| |||||||||| |||| Sbjct 3 CCTTAGGACACCTGCGTTACCTTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTG 62 Query 106 ACAATGTCATCAACCCGGATCGGCCCGCGAAG 137 ||| |||| || |||||| ||||| || Sbjct 63 ACACTGTCCTCGGAGGGGATCGTGCCGCGTAG 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1632903377952