Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq8604 125 1e-26 seq139782 95.1 2e-17 >seq8604 Length=7606 Score = 125 bits (138), Expect = 1e-26 Identities = 109/133 (82%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | ||| || |||||||| |||| | ||| ||| || ||| | Sbjct 6975 GTACGAGAGGAACCGTTCA-TTCGGA-TAATTGGTATTTGGGCCTGCTTGAGCAAGCAAT 6918 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||| |||| | |||||||||||||||||||||||||||||||||| ||| | Sbjct 6917 GGCCCGAAGCTATCATCCGTTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCGTGCTA 6858 Query 121 GAACGGGGTGATT 133 ||||| | |||| Sbjct 6857 GAACGCGACGATT 6845 >seq139782 Length=254 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || | |||||| || | || |||| |||| Sbjct 176 GTACGAGAGGAACCGCAGG-TTCGGAC-ATTTGGTTCATGTGCTTGATCGACCGATCAGT 119 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||| | |||||||| |||||||||||||||||||||||| Sbjct 118 GGCGCGAAGCTACCATCCGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 65 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818085396736