Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq8604 726 0.0 seq139103 253 6e-65 seq3764 250 8e-64 seq14143 232 2e-58 >seq8604 Length=7606 Score = 726 bits (804), Expect = 0.0 Identities = 468/507 (92%), Gaps = 5/507 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| Sbjct 4300 GTACTCATTCCAATTACAAGACTGAAAAG--CCCTGTATTGTTATTTATTGTCACTACCT 4357 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4358 CCCCGTATCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 4417 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 4418 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTAAAACCATGGTA 4477 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 4478 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAAACATCGCCAGCA 4537 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACC-AAGGAGCCCCGAAGGGCGTTGG 299 ||||||||||||||||| |||||||||||||||||| || ||| ||||||| Sbjct 4538 CAAGGCCATGCGATTCGAAAAGTTATTATGAATCACCAAACAAGCGGTTGCCCGCGTTGG 4597 Query 300 TTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCT 358 |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| Sbjct 4598 TTTTTTATCTAATAAATACATCCCTTCCAGAAGTCGGGATTTTTAGCATGTATTAGCTCT 4657 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| Sbjct 4658 AGAATTACCACGGTTATCCAAGTAGTAAGGTATAATCAAATAAACTATAACTGATTTAAT 4717 Query 419 GAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAATCT 477 ||||||||||||||||||| ||| | | ||| |||||||||||||||||||||||||||| Sbjct 4718 GAGCCATTCGCAGTTTCACAGTACAAAGTTGTTTATACTTAGACATGCATGGCTTAATCT 4777 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 4778 TTGAGACAAGCATATGACTACTGGCAG 4804 >seq139103 Length=241 Score = 253 bits (280), Expect = 6e-65 Identities = 194/227 (85%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||||||||||||| |||| ||||||||||||| |||||||||||||| Sbjct 1 TATTTTTCGTCACTACCTCCCCGTGCTGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCC 60 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||| || |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 61 TTGGATGTGGTCGCGATTTCTCAGGCGCCCTCTCCGGAATCGAACCCTGATTCCCCGTTA 120 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| |||||||||||| || ||||||||||| |||||||| |||||| | ||| Sbjct 121 CCCGTTACAACCATGGTAGGCGCATAACCTACCATCGACAGTTGATAAGGCAGACACTTG 180 Query 223 AATGAACCATCGCCGGCTC-AAGGCCATGCGATTCG-TTAAGTTATT 267 || || | |||||||| | |||||||||||| | | |||||||| Sbjct 181 AAAGATTCGTCGCCGGCACGTAGGCCATGCGATCAGCTGAAGTTATT 227 >seq3764 Length=19523 Score = 250 bits (276), Expect = 8e-64 Identities = 218/267 (82%), Gaps = 3/267 (1%) Strand=Plus/Plus Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 |||||||||||||| | || || |||| || |||| ||||| | |||||||||||| Sbjct 5454 CTCATTCCAATTACGGGGCCTCATTAGAGTCCCGTATTGTTATTTTTCGTCACTACCTCC 5513 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||||| |||| ||||||||||||| ||||||||||||||||||||||| | || |||| Sbjct 5514 CCGTGCTGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCCTTGGATGTGATCGCGATTTC 5573 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||| Sbjct 5574 TCAGGCGCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCTGTTACAACCATGGTAGG 5633 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC- 241 | || ||||||||||| | |||||| |||||| | ||||| || | || ||||| | Sbjct 5634 CGCATAACCTACCATCGACAATTGATAAGGCAGACACTTGAAAGATTCTTCCCCGGCACG 5693 Query 242 AAGGCCATGCGATTCG-TTAAGTTATT 267 | |||||||||| | | |||||||| Sbjct 5694 TACGCCATGCGATCAGCTGAAGTTATT 5720 >seq14143 Length=241 Score = 232 bits (256), Expect = 2e-58 Identities = 189/227 (83%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||||||||||||| |||| ||||||||||||| |||||||||||||| Sbjct 1 TATTTTTCGTCACTACCTCCCCGTGCTGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCC 60 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||| | || |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 61 TTGGATGTGATCGCGATTTCTCAGGCGCCCTCTCCGGAATCGAACCCTGATTCCCCGTTA 120 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 || ||| |||||||||||| || ||||||||||| | |||||| |||||| | ||| Sbjct 121 CCTGTTACAACCATGGTAGGCGCATAACCTACCATCGACAATTGATAAGGCAGACACTTG 180 Query 223 AATGAACCATCGCCGGCTC-AAGGCCATGCGATTCG-TTAAGTTATT 267 || || | || ||||| | | |||||||||| | | |||||||| Sbjct 181 AAAGATTCTTCCCCGGCACGTACGCCATGCGATCAGCTGAAGTTATT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508278658304