Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq8365 233 2e-56 seq21474 185 7e-42 >seq8365 Length=5311 Score = 233 bits (258), Expect = 2e-56 Identities = 778/1188 (65%), Gaps = 32/1188 (3%) Strand=Plus/Plus Query 65780 CTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCG 65839 ||||| |||| || ||| || | || | ||||| | || ||||||||||| || Sbjct 1308 CTCTCAAACGGGTAACGCATGAGAATGAACGCATCGGCTAATCCCTGAACTCCAATGCCA 1367 Query 65840 ATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCG 65899 || ||||| | | |||||| ||| || ||||| || || || ||||| |||||| Sbjct 1368 ATCGGACGGTTCCTTTTATTGGAGCGTTCCGTTTCAGGAACGGGATAATAATTAATATCG 1427 Query 65900 ATAATGCGATTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATC 65958 ||||| ||| || || || || | || | ||| | | | | || | |||| || Sbjct 1428 ATAATCTTATTTAAGTTTCGGGTAATGACTTTAGCGACATCCTTGAGCTT-TGCGAAGTC 1486 Query 65959 AAAATGTTTAGGACGATCGGGAGT-GCCGGACACCACAAACTTGGGAAGGGCAAGAGATG 66017 ||| | | || | | || || | || || | | ||| || || | || | Sbjct 1487 AAA--GGTGCGG--GTTTTGGTGTCGACGAAC----CGA--TTG---AGTGCGACTGAAG 1533 Query 66018 CGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGAT 66077 | | || || || || || ||||| |||| | ||| || || ||||| ||||| |||| Sbjct 1534 CCAAATTACACACGGCAATTTCGTCGGGAGATGAATATTCAACGATTTCAGTGCATAGAT 1593 Query 66078 TACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGT 66137 | ||| ||||| || | ||| |||||||| ||| || ||||| || || | Sbjct 1594 TTGAGCATTTAATGGTTCCGAGATTTTGTTGATTGGACTTTCGGTTGCAATGGTCTTTAT 1653 Query 66138 ACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGC 66197 | | ||||||||| ||||| ||||| | || | ||| | ||||| | ||| | | Sbjct 1654 AAACCATGTACGGTGTGCCCGTCTCGATCTGAGCCTCGACAATGGCATACCACAATGACT 1713 Query 66198 GTGCCTTCACCGTACGTACCGCCCTACCTTTG-CGTTCGTAATGTTCGTAGAGGTGTTCG 66256 | ||| ||| |||| | | | ||| | |||||| | || || | | || Sbjct 1714 GAGCCCGAACCTGACGTTT-GTATTTCTTTTCTCTTTCGTATTTCTCATATAAATCCTCA 1772 Query 66257 AAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCA- 66315 || | | |||||| || | || || || | |||||||||||||| ||||| Sbjct 1773 AACGCCTGACCCCACGTGTCATGTAAACCCGGGCATTCGTGTGGACACATCAATGACCAT 1832 Query 66316 ATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAG 66375 ||| ||||| ||| ||||| ||| || | ||| || ||||| ||| | ||||| | Sbjct 1833 ATC-CCATCGGATTCAACACGTTTCATGAACAAATCGGGAATCCAAAGGCCATAGAACAA 1891 Query 66376 ATCGCGTGCTCGTTGCTCCTCA-ATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGA 66434 || ||||| ||| |||||| | ||||| || || | | ||||||||| || || | Sbjct 1892 GTCACGTGCACGTATTTCCTCAGAACCCGTG-TTCTTCCTAAGGTCGAGGAATTCGAATA 1950 Query 66435 TGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTT 66494 ||||||||||| ||||| | ||| | ||||| | ||| ||||||| || || | Sbjct 1951 CATCGGCATGCCACGGTTCGATGTAAACTGCGAAAGCGCCGGGACGTTTGTTCCCCCCCT 2010 Query 66495 GGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATT 66554 | |||||||| || || ||||||||| || ||||||||||| || | || || ||| Sbjct 2011 GATCGACGTATCGGGCAGTATTGTTGAACACGCGCAACATCGGGACCAATCCATTTGATA 2070 Query 66555 TGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAA 66614 ||||||| || || | || | || |||| ||| |||||||| | || | Sbjct 2071 TGCCATTCGTACCCGCAATATAAGTGCCCTTAGCCCTTATGCAATGAACATTTATTCCGA 2130 Query 66615 TACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAA 66674 |||||||||| | ||||| ||| |||| || | | ||| | | || || |||| Sbjct 2131 TACCACCGGCAGCTTTCGATATGACAGCGCATTGTTTGAGTGTGTCGTAAATCCCCTCAA 2190 Query 66675 TGGAGTCACCCTTGATGGTCAGGAGGTAGCA--TGAACTAAGTTGGGGTTTGGGTGTGGC 66732 | |||| | || ||||||| | | | || || || | ||| || | || || | Sbjct 2191 TACTGTCATCTTTCATGGTCAATAAGAAACAACTGGAC--AATTGTGGGTGCGGAGTTCC 2248 Query 66733 GGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGT 66792 ||| ||| || || |||| || || ||||| | | |||||| ||| ||||| Sbjct 2249 GGCATTGAACAGTGTCGGTGATGCATGAGTAAACCATCGTTCGGACATGAGATTATACGT 2308 Query 66793 CTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAGGT 66851 ||| ||| |||| ||||||| | || || ||||| | || ||| ||||| || | || Sbjct 2309 CTCAATGGCAGCGTCAATGTCATTTCCGTGTATCCCCACAGCGACA-CGCATGAGCATGT 2367 Query 66852 ATTGAGGCCGTTCGACCAGCCGATCC--TTGATATGCATTAAGTAGGAGCGTTCCAGGGT 66909 || || ||||| | | | ||| ||||| | ||||| || || || || || || Sbjct 2368 GCTGCGGTCGTTC--CGCGACTTTCCTATTGATCTTAATTAAATATGACCGCTCAAGTGT 2425 Query 66910 CTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGGC 66957 |||| ||| || || ||||| ||||| | ||| | |||||| Sbjct 2426 TTTGAAACCGAAATAATTGTAATGATAATCGCGATCATAAATGATGGC 2473 >seq21474 Length=6928 Score = 185 bits (204), Expect = 7e-42 Identities = 247/343 (72%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 61470 AACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAG 61529 ||| || ||||||| ||||| || | || ||||| || |||||| |||| || || Sbjct 5700 AACTGCCACATTTGCCGAACGTTTAGTTGCGTTTGCATCAGTTGAGGGTATATTCTTTAG 5759 Query 61530 TGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTT 61589 || || || ||| |||| |||||| | |||||||||||||||||||| || ||||||| Sbjct 5760 CGGTTCATTCGCCTCAATATTTTGGCTAAAGAAACGTGGACTTATGCCGGGATTGACCTT 5819 Query 61590 CAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATT 61649 ||| ||||| |||||||||| || ||||| | ||||||||||| || ||| || || Sbjct 5820 CAGTAATGAACTGATATCACGTGATGAGGGACTTCATTGTGATTTCGCGTGTTTACTCTT 5879 Query 61650 CAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGC 61709 |||| || | || ||| || ||| || | | | |||||| ||| || Sbjct 5880 TAAAC---ATATCGTTAATAAACCAACGGTCGAACAAATCACTCGTATTGTTACTGAAGC 5936 Query 61710 GGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAA 61769 || || || |||||||| ||| |||| || || | || ||| |||||||||| ||||| Sbjct 5937 TGTGACCATTGAACAGGAGTTTTTGACCGATGCACTTCCGGTCGCACTCATCGGTATGAA 5996 Query 61770 TTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 |||| ||| ||| | || ||||||| ||| || || ||| Sbjct 5997 CTGTGTACTGATGAAGTCATACATTGAATATGTCGCTGATCGT 6039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396887474033360