Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_029594.1 Length=4301 Score E Sequences producing significant alignments: (Bits) Value seq49779 86.0 2e-13 >seq49779 Length=5410 Score = 86.0 bits (94), Expect = 2e-13 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 743 AAGCCAAGAGGCGAATGGTGGGATGGTTATTGTG-GTAACAATGGTGTTATTATTGATGA 801 ||||| ||||| ||||||||| || || | | || || | || || ||||| || Sbjct 4979 AAGCCGAGAGGACCATGGTGGGACGGCTACGATCAGGAAGAA-GCCGTCATCATTGACGA 5037 Query 802 TTTTTATGGATGGTTGAAATTTGACGAACTTTTGAAAATTTCAGATAGATATCCTTATAG 861 ||| || |||||| | |||| ||| || | || ||||| | || |||||||| ||| Sbjct 5038 TTTCTACGGATGGATAAAATATGATGAGTTATTAAAAATATGTGACAGATATCCACATAA 5097 Query 862 GGTTCCCATTAAAGGCGGTTACGAGAATTTTTGTAGCAAAATTATTATCATTACTTCGAA 921 ||| || ||||||| || | || | |||| | ||||| ||||| || || || || Sbjct 5098 GGTACCGGTTAAAGGTGGATTTGAAGAATTTTATTCTAAAATAATTATAATAACCTCAAA 5157 Query 922 CATTGACATTTCCAAGTGGTATAAATTTGATGGTTA 957 || || | || | |||||||||||| | || || Sbjct 5158 TATAGAGGTATCTGAATGGTATAAATTTAACGGATA 5193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13630229559810