Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq7622 116 5e-24 >seq7622 Length=2935 Score = 116 bits (128), Expect = 5e-24 Identities = 177/250 (71%), Gaps = 24/250 (10%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||| ||||||||||||| | ||||| || ||||| || || ||| Sbjct 68 CTTAACCTTCCAGCACTGGGCAGGCGTCAGCGCCTATACTTCACCTTACGGTTTT-GCAG 126 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTA-TTCTCTGCGACCACCACCAGCTC 119 |||||||||||| ||||||||||| | || || |||||| | | Sbjct 127 ACACCTGTGTTTTTGATAAACAGTCGCCTGGGATTAATTTTCTGCG----------GGTT 176 Query 120 AACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | || ||| | ||| |||||| |||||||||||||||| | ||||||||| Sbjct 177 ACCA--TCGGTAACCT---------CCCCTTATCCCGAAGTTACGGGGTCTTTTTGCCGA 225 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTC-TCTACCTGACCACCTGTGTCG 238 ||||||||| | ||||| | || | |||| || ||| | ||| ||| |||||||| | Sbjct 226 GTTCCTTAACAATAGTTCTCTCGCTCACCTTGGTGTTCTTACACCCGACTACCTGTGTTG 285 Query 239 GTTTACGGTA 248 ||| ||||| Sbjct 286 GTTCTCGGTA 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694293067608