Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq15676 318 2e-84 >seq15676 Length=1149 Score = 318 bits (352), Expect = 2e-84 Identities = 372/506 (74%), Gaps = 41/506 (8%) Strand=Plus/Plus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCG 82 || |||| ||||||||||||| ||| | |||||| || || ||| ||| | | Sbjct 140 AGTGGCGAACGGGTGAGTAACACGTAGTTAACCTAACCAAAGGACTGGGACAACTTTTGG 199 Query 83 AAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATC---AAAGCT 139 ||| | | |||||||| ||||| | | || || ||| | | |||||| Sbjct 200 AAACGAAAGCTAATACCGGATAAGAAGCAATT---------TAAAAGGAGCCAAAAAGCT 250 Query 140 CCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAA 199 || | | ||| | | ||||||||||||||||||||| ||||| || ||||| Sbjct 251 CCACCAAT---GGAAGGGACTGCGTCTGATTAGCTAGTTGGTGTGGTAAGAGCGCACCAA 307 Query 200 GGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTC 259 |||||||||| ||||||| |||||||| ||| |||||||| ||| |||||||||||| | Sbjct 308 GGCGACGATCGGTAGCCGGACTGAGAGGTTGACCGGCCACACTGGGACTGAGACACGGCC 367 Query 260 CAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAG 319 || ||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| Sbjct 368 CAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTGCACAATGGGCGAAAGCCTGATGCAG 427 Query 320 CAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--- 376 ||| |||||||||| || || | ||||| ||||| |||||| | |||||| Sbjct 428 CAATGCCGCGTGAGTGAAGACGTTTTTCGGAATGTAAAACTCTGTTATATGGGAAGAAGA 487 Query 377 --TAA--------------------TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTAC 414 ||| ||||||||| | ||| ||| ||||||||||| Sbjct 488 AGTAAAAGAGGAAATGCTTTTACTGTGACGGTACCATATGAGAAAGGGACGGCTAACTAC 547 Query 415 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAA 474 ||||||||||||||||||||||||||| | ||||||||||||||||| | |||||||| Sbjct 548 GTGCCAGCAGCCGCGGTAATACGTAGGTCCCGAGCGTTATCCGGAATTA-TTGGGCGTAA 606 Query 475 AGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| ||| |||||||| |||||| Sbjct 607 AGGGCGCGCAGGTGGTTAGATAAGTC 632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497361941504