Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2028 289 2e-73 >seq2028 Length=154558 Score = 289 bits (320), Expect = 2e-73 Identities = 609/906 (67%), Gaps = 9/906 (1%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || || |||| || ||||| | || || || ||||| || || | ||| Sbjct 60680 GAACCTTTACTGAAAGAAAACCCTCGAAGATTTGTTTTATTCCCAATTGAATTCCCAGAT 60621 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| | ||||| | || ||||||||||| ||||| ||||| || || | Sbjct 60620 ATTTGGCAGAAATACAAGGAAGCTGAAGCTTCCTTTTGGACTACCGAGGAAGTGGACCTC 60561 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTT---ATCGAGCGGTGAACAACATTTCATTAAA 61203 || | || | |||||||| | ||| | |||| |||||||||| Sbjct 60560 ACCCATGATCTACGACACTGGGAGAAACTGAAATCT---GAAGAACGACATTTCATTTCG 60504 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || ||||| || || ||||| || || || ||||| || ||||||||| | |||||||| Sbjct 60503 CACGTGTTAGCTTTTTTTGCTGCCTCAGATGGTATTGTAAATGAGAATCTTGTGGAACGT 60444 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| || || || |||||| | || || |||||||| || || ||||||||||| || Sbjct 60443 TTCAGTCAAGAAGTTCAAGTGACTGAAGCTCGTTGTTTTTATGGATTCCAGATTGCAATT 60384 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 || ||| |||| || || |||||||| || || || ||||| ||||| || | Sbjct 60383 GAAAATATCCATTCTGAAATGTACAGCAAACTTATTGAAACGTATATCAGCGATCCCAAT 60324 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 ||| || ||||| || || || || || || ||| || ||| |||||| ||| Sbjct 60323 GAAAAAGAGTTCTTGTTTAACGCTATTGAAACCATGCCGTGTGTTAAGAAGAAAGCTGAT 60264 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTT 61503 |||||| | || ||||| | | | ||| | | || || ||| ||||| |||| ||| Sbjct 60263 TGGGCCCTAAAGTGGATTAGCTCGAAAACATCCTCGTTCGGCGAAAGATTGGTGGCTTTT 60204 Query 61504 GCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAA 61563 || | || || || | ||||||||||| ||||| || || || ||||| |||||| Sbjct 60203 GCTGCCGTTGAAGGCATTTTTTTCAGTGGTAGCTTTGCAGCGATTTTCTGGTTAAAGAAA 60144 Query 61564 CGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATG 61623 ||||| |||||||||||| | || || ||||| |||||||| | || || || | Sbjct 60143 CGTGGTCTTATGCCCGGTTTAACATTTTCAAATGAATTGATATCCAGAGATGAAGGTCTA 60084 Query 61624 CATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAG 61683 |||||||||||||| || |||||| || ||||| | || || | || Sbjct 60083 CATTGTGATTTTGCATGCTTACTATTCTCAC---ATCTGCATCAGAAACCATCACAAGAA 60027 Query 61684 CGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCT 61743 | || ||| || || || || || || ||||| || || || |||| ||| Sbjct 60026 AGAGTAACCAGTATTATTGCAGATGCAGTTACAATAGAACAAGAGTTCTTGTCTGAGGCT 59967 Query 61744 TTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTT 61803 ||||| ||| || || || |||||||| | | |||| |||||||| |||||||| Sbjct 59966 TTGCCAGTCAGTCTGATTGGAATGAATTGCAAATTGATGTGTCAGTATATAGAATTTGTA 59907 Query 61804 GCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTT 61863 || || ||| |||| || || || ||| |||||| | | | || || ||| Sbjct 59906 GCTGATCGTTTGTTAAGTGAATTAGGCTGCAAGAAAATCTATGGTGCAACGAATCCGTTT 59847 Query 61864 GATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGC 61923 || || ||| || ||||| || || || || || ||||| || || || ||| Sbjct 59846 GACTTTATGACGATCATTTCTACAGAAGGTAAAACAAACTTTTTTGAAAAGAAAGTGGGC 59787 Query 61924 GACTAT 61929 || ||| Sbjct 59786 GAATAT 59781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397490978157440