Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq55454 197 2e-48 seq102835 95.1 2e-17 seq57292 77.0 5e-12 >seq55454 Length=9146 Score = 197 bits (218), Expect = 2e-48 Identities = 177/218 (81%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 7677 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 7734 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| ||||||||||| ||||||| ||||||| | | ||| | | || Sbjct 7735 CTCGTTCAAGGGGAACAATTGCAAGCCCCTATCCCAATCACGAAGGAGGTTCCACGGGTT 7794 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | | | | | || || | | || || || | | ||||||||||||||||||| Sbjct 7795 ACCCAGTCTTTACAGACAGGGATAAAAACACGCTGCTTCCTTCAGTGTAGCGCGCGTGCG 7854 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 7855 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 7892 >seq102835 Length=6735 Score = 95.1 bits (104), Expect = 2e-17 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 1488 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 1432 >seq57292 Length=7035 Score = 77.0 bits (84), Expect = 5e-12 Identities = 52/57 (91%), Gaps = 1/57 (2%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 695 TCAGTGTAGCGCGCGTGCGGCCCCAGACAGCTA-GGGCATCACAGACCTGTTATTGC 750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 750510100940